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mueller 574235e4cf Initial commit 2021-05-19 19:15:11 +00:00
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How to Apply These Terms to Your New Programs
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README.md
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@@ -1,19 +1,3 @@
# Requirements: # cobald-testenv
CentOS 7 vm equipped with 2 CPU cores and 2 disks: one main disk containing OS
and an additional virtio disk containing docker images. Typically choose 5GB
for size of each disk.
# Tags WIP. htcondor, slurm and cobald/tardis test environment
- htcondor, singularity, docker, slurm
- htcondor-containered, slurm-config
Just update slurm config using --tags slurm-config.
Full setup of just slurm using --skip-tags htcondor,singularity
# Example: Setup SLURM
First adjust inv.yml to you needs, specifying the hostname of your VM. Run:
ansible-playbook -i inv.yml --skip-tags htcondor,singularity play.yml
Configuration goes into ```/container/volumes/slurm/slurm.conf``` generated
from ```roles/slurm/templates/slurm.conf.j2```.
base.yml
-27
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@@ -1,27 +0,0 @@
---
- hosts: all
tasks:
- name: "install epel repo" # for htop etc.
yum:
name: epel-release
state: present
- name: "install tools"
yum:
name: [ vim-enhanced, htop, screen, bind-utils, nmap-ncat, net-tools ]
state: present
- name: "screenrc native scrolling in tmux"
copy:
content: "termcapinfo xterm* ti@:te@\ntermcapinfo screen* ti@:te@\n"
dest: "{{item}}"
with_items:
- "~{{unpriv_user}}/.screenrc"
- "~root/.screenrc"
- name: "install ssh-key"
authorized_key:
user: "{{cfg_unpriv_user}}"
key: "{{cfg_ssh_key}}"
state: present
cobald.yml
-61
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@@ -1,61 +0,0 @@
---
- hosts: slurm, cobald
vars:
container_privileged: True
slurm_num_nodes: 10
tasks:
- name: "setup docker"
import_role: name=docker
tags: docker
- name: "get facts from existing cobald instance (i.e. hostname)"
include_role:
name: cobald
tasks_from: facts
apply:
tags: slurm, cobald, slurm-config
tags: slurm, cobald, slurm-config
vars:
container_name: cobald
- name: "setup slurm test environment in docker containers"
include_role:
name: slurm
apply:
tags: slurm
vars:
slurm_user: slurm # or root
slurm_user_accounts:
- name: cobald
dir: /var/lib/cobald
num_nodes: "{{slurm_num_nodes}}"
extra_nodes:
- name: cobald
hostname: "{{cobald_container_hostname}}" # from cobald/facts.yml above
# hostname is used as NodeHostname, which is used slurms "networking
# code" (https://bugs.schedmd.com/show_bug.cgi?id=8615).
# It works either way around, but one of NodeName or NodeHostname has
# to match the container name (-n flag, not --hostname) since when
# submitting tasks to the slurm controller, it matches access
# permissions against a reverse lookup of the submitting ip address.
# Docker always and unconfigureably resolves the container ip in any
# network to containername.netname, where containername is the
# containers runtime name (not hostname supplied!) and netname is
# the network name in host environment. We should run our own dns...
docker_network: slurm
slurm_hostsystem_cluster_access: True
when: '"slurm" in group_names'
tags: slurm, cobald, influxdb, slurm-config
# tags: cobald requires some slurm facts, so cobald tag is included here
- name: "install cobald"
include_role:
name: cobald
apply:
tags: cobald
vars:
cobald_slurm: True
container_name: cobald
# docker_network: slurm # overriden by vars/slurm.yml
when: '"cobald" in group_names'
tags: cobald, influxdb, singularity
htcondor.yml
-32
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@@ -1,32 +0,0 @@
---
- hosts: htcondor
tasks:
- name: "install htcondor repo"
yum:
name: https://research.cs.wisc.edu/htcondor/repo/8.9/htcondor-release-current.el7.noarch.rpm
state: present
tags: htcondor
- name: "install htcondor software "
yum:
name: htcondor-ce
state: present
tags: htcondor
- name: "remove minicondor configuration"
yum:
name: minicondor
state: absent
tags: htcondor
- name: "setup singularity"
import_role: name="singularity"
tags: singularity
- name: "setup docker"
import_role: name=docker
tags: docker
- name: "setup htcondor test environment in docker containers"
import_role: name=docker-htcondor
tags: htcondor-containered, htcondor
install.sh
-4
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@@ -1,4 +0,0 @@
mkdir -p ./collections/ansible_collections/community
# git clone --depth=1 -b 1.2.1 https://github.com/ansible-collections/community.grafana.git ./collections/ansible_collections/community/grafana
git clone --depth=1 -b 1.2.1-extended https://github.com/ansible_community.grafana.git ./collections/ansible_collections/community/grafana
inv.yml
-28
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@@ -1,28 +0,0 @@
all:
hosts:
ed-c7-1:
ansible_user: root
ansible_host: ed-c7-1.virt.magni.thoto.net
ssh_args: -o ControlMaster=auto -o ControlPersist=60s
# ansible_host: 192.168.122.139
unpriv_user: thoto
cfg_unpriv_user: thoto
ed-c7-2:
ansible_user: root
ansible_host: ed-c7-2.virt.uller.thoto.net
# ansible_host: 192.168.123.60 # + jumphost
ssh_args: -o ControlMaster=auto -o ControlPersist=60s
unpriv_user: thoto
cfg_unpriv_user: thoto
children:
htcondor:
hosts:
ed-c7-1:
slurm:
hosts:
ed-c7-1:
ed-c7-2:
cobald:
hosts:
ed-c7-1:
ed-c7-2:
play.yml
-10
View File
@@ -1,10 +0,0 @@
---
- name: base setup
import_playbook: base.yml
- name: setup htcondor
import_playbook: htcondor.yml
when: '"htcondor" in group_names'
- name: setup slurm and cobald
import_playbook: cobald.yml
roles/cobald/defaults/main.yml
-6
View File
@@ -1,6 +0,0 @@
cobald_domainname: cobald.local
influx_admin_user: my-user
influx_admin_pw: my-password
influx_org: my-org
influx_pubport: 28086
influx_bucket: batleth
roles/cobald/files/28-sync-container-slurmd
-3
View File
@@ -1,3 +0,0 @@
#!/bin/sh
[ /slurm-singimage/slurmd.sif -nt /shared/slurmd.sif ] && \
cp /slurm-singimage/slurmd.sif /shared/slurmd.sif
roles/cobald/files/31-slurmd-configless
-3
View File
@@ -1,3 +0,0 @@
#!/bin/sh
slurmd --conf-server ${slurmctld} -D -N ${nodename} 2>/dev/null 1>/dev/null &
tail --retry --pid $! -f ${SLURMD_LOG_PATH} ${SLURM_SCHED_LOG_PATH}
roles/cobald/files/cgroup.conf.noautomount
-11
View File
@@ -1,11 +0,0 @@
###
#
# Slurm cgroup support configuration file
#
# See man slurm.conf and man cgroup.conf for further
# information on cgroup configuration parameters
#--
CgroupAutomount=no
ConstrainCores=no
ConstrainRAMSpace=no
roles/cobald/files/cobald-config/config.yaml
-31
View File
@@ -1,31 +0,0 @@
---
pipeline:
- __type__: cobald.controller.linear.LinearController
low_utilisation: 0.9
high_allocation: 0.9
rate: 0.10
- !Limiter
minimum: 3
- !TelegrafPipelineMonitor
poll: True
- !TardisPoolFactory
configuration: /etc/cobald/tardis.yaml
logging:
version: 1
root:
level: DEBUG
handlers: [console, file]
handlers:
console:
class: logging.StreamHandler
formatter: test
level: DEBUG
stream: ext://sys.stderr
file:
class: logging.handlers.RotatingFileHandler
formatter: test
level: WARNING
filename: /var/log/cobald/cobald-tardis.log
formatters:
test:
format: " %(name)s %(message)s"
roles/cobald/files/cobald-config/tardis.yaml
-41
View File
@@ -1,41 +0,0 @@
Plugins:
SqliteRegistry:
db_file: /tmp/drone_registry.db
TelegrafMonitoring:
host: ed-telegraf
port: 8094
#BatchSystem:
# adapter: FakeBatchSystem
# allocation: 1.0
# utilisation: !PeriodicValue
# period: 60
# amplitude: 0.15
# offset: 0.80
## phase: 1.
# phase: 1.6
# machine_status: Available
BatchSystem:
adapter: Slurm
max_age: 0.1
options:
partition: cobald
Sites:
- name: slurmtest
adapter: Slurm
quota: 20
slurmtest:
# executor: ...
StatusUpdate: 0.1
MachineTypes:
- m1.a
MachineTypeConfiguration:
m1.a:
Walltime: 5
Partition: container
StartupCommand: /usr/local/bin/start-drone
# SubmitOptions: ...
MachineMetaData:
m1.a:
Cores: 3 # cores
Memory: 1 # GB
Disk: 4 # not passed
roles/cobald/files/cobald-entrypoint.sh
-7
View File
@@ -1,7 +0,0 @@
#!/bin/sh
for i in /usr/local/lib/entrypoints.d/* ; do
[ -f $i ] && /bin/sh $i || break
done
exec "${@:-/bin/bash}"
roles/cobald/files/grafana-dashboard.json
-589
View File
@@ -1,589 +0,0 @@
{
"annotations": {
"list": [
{
"builtIn": 1,
"datasource": "-- Grafana --",
"enable": true,
"hide": true,
"iconColor": "rgba(0, 211, 255, 1)",
"name": "Annotations & Alerts",
"type": "dashboard"
}
]
},
"editable": true,
"gnetId": null,
"graphTooltip": 0,
"id": 1,
"iteration": 1623317629899,
"links": [],
"panels": [
{
"collapsed": false,
"datasource": null,
"gridPos": {
"h": 1,
"w": 24,
"x": 0,
"y": 0
},
"id": 4,
"panels": [],
"title": "Row title",
"type": "row"
},
{
"aliasColors": {},
"bars": false,
"dashLength": 10,
"dashes": false,
"datasource": "InfluxDB",
"fieldConfig": {
"defaults": {
"unit": "none"
},
"overrides": []
},
"fill": 1,
"fillGradient": 0,
"gridPos": {
"h": 9,
"w": 12,
"x": 0,
"y": 1
},
"hiddenSeries": false,
"id": 2,
"interval": "1s",
"legend": {
"avg": false,
"current": false,
"max": true,
"min": true,
"show": true,
"total": false,
"values": true
},
"lines": true,
"linewidth": 1,
"maxDataPoints": 200,
"nullPointMode": "null",
"options": {
"alertThreshold": true
},
"percentage": false,
"pluginVersion": "7.5.7",
"pointradius": 2,
"points": false,
"renderer": "flot",
"seriesOverrides": [],
"spaceLength": 10,
"stack": false,
"steppedLine": false,
"targets": [
{
"groupBy": [
{
"params": [
"$__interval"
],
"type": "time"
},
{
"params": [
"null"
],
"type": "fill"
}
],
"orderByTime": "ASC",
"policy": "default",
"query": "f_r = (r, accumulator) => ({\n _value: accumulator._value + (\n if r._value == \"AvailableState\" then 1\n else if r._value == \"DownState\" then -1\n else 0)\n })\n\nnodes = from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> keep(columns: [\"tardis_machine_name\", \"_time\"])\n |> sort(columns: [\"_time\"], desc: true)\n |> unique(column: \"tardis_machine_name\")\n// |> yield()\n\noffset = from(bucket: \"batleth\")\n |> range(start: 0, stop: v.timeRangeStart)\n |> filter(fn: (r) => r._field == \"state\")\n |> group(columns: [\"tardis_machine_name\", \"machine_type\"])\n |> reduce(fn: f_r, identity: {_value: 0})\n |> duplicate(column: \"_stop\", as: \"_time\")\n\nnew = from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._field == \"state\")\n// |> filter(fn: (r) => r.tardis_machine_name == \"${machine}\")\n |> group(columns: [\"tardis_machine_name\", \"machine_type\"])\n |> window(every: $__interval)\n |> reduce(fn: f_r, identity: {_value: 0})\n |> duplicate(column: \"_stop\", as: \"_time\")\n\nunion(tables: [offset, new])\n |> window(every: inf)\n |> cumulativeSum()\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> yield()\n",
"refId": "A",
"resultFormat": "time_series",
"select": [
[
{
"params": [
"value"
],
"type": "field"
},
{
"params": [],
"type": "mean"
}
]
],
"tags": []
}
],
"thresholds": [],
"timeFrom": null,
"timeRegions": [],
"timeShift": null,
"title": "nodes running",
"tooltip": {
"shared": true,
"sort": 0,
"value_type": "individual"
},
"type": "graph",
"xaxis": {
"buckets": null,
"mode": "time",
"name": null,
"show": true,
"values": []
},
"yaxes": [
{
"format": "none",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
},
{
"format": "short",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
}
],
"yaxis": {
"align": false,
"alignLevel": null
}
},
{
"aliasColors": {},
"bars": false,
"dashLength": 10,
"dashes": false,
"datasource": "InfluxDB",
"fieldConfig": {
"defaults": {},
"overrides": []
},
"fill": 1,
"fillGradient": 0,
"gridPos": {
"h": 9,
"w": 12,
"x": 12,
"y": 1
},
"hiddenSeries": false,
"id": 8,
"interval": "1s",
"legend": {
"avg": false,
"current": false,
"max": false,
"min": false,
"show": true,
"total": false,
"values": false
},
"lines": true,
"linewidth": 1,
"maxDataPoints": null,
"nullPointMode": "null",
"options": {
"alertThreshold": true
},
"percentage": false,
"pluginVersion": "7.5.7",
"pointradius": 2,
"points": false,
"renderer": "flot",
"seriesOverrides": [],
"spaceLength": 10,
"stack": false,
"steppedLine": false,
"targets": [
{
"groupBy": [
{
"params": [
"$__interval"
],
"type": "time"
},
{
"params": [
"null"
],
"type": "fill"
}
],
"orderByTime": "ASC",
"policy": "default",
"query": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._measurement == \"tardis_pipeline\")\n |> filter(fn: (r) => r._field == \"demand\" or r._field == \"supply\")\n |> drop(columns: [\"host\"])\n |> aggregateWindow(every: $__interval, fn: mean)\n |> yield()",
"queryType": "randomWalk",
"refId": "A",
"resultFormat": "time_series",
"select": [
[
{
"params": [
"value"
],
"type": "field"
},
{
"params": [],
"type": "mean"
}
]
],
"tags": []
}
],
"thresholds": [],
"timeFrom": null,
"timeRegions": [],
"timeShift": null,
"title": "pipeline demand/supply (mean)",
"tooltip": {
"shared": true,
"sort": 0,
"value_type": "individual"
},
"type": "graph",
"xaxis": {
"buckets": null,
"mode": "time",
"name": null,
"show": true,
"values": []
},
"yaxes": [
{
"$$hashKey": "object:115",
"decimals": null,
"format": "short",
"label": "cpus",
"logBase": 1,
"max": null,
"min": null,
"show": true
},
{
"$$hashKey": "object:116",
"format": "short",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
}
],
"yaxis": {
"align": false,
"alignLevel": null
}
},
{
"aliasColors": {},
"bars": false,
"dashLength": 10,
"dashes": false,
"datasource": "InfluxDB",
"fieldConfig": {
"defaults": {},
"overrides": []
},
"fill": 1,
"fillGradient": 0,
"gridPos": {
"h": 8,
"w": 12,
"x": 0,
"y": 10
},
"hiddenSeries": false,
"id": 6,
"interval": "1s",
"legend": {
"avg": false,
"current": false,
"max": false,
"min": false,
"show": true,
"total": false,
"values": false
},
"lines": true,
"linewidth": 1,
"nullPointMode": "null",
"options": {
"alertThreshold": true
},
"percentage": false,
"pluginVersion": "7.5.7",
"pointradius": 2,
"points": false,
"renderer": "flot",
"seriesOverrides": [],
"spaceLength": 10,
"stack": false,
"steppedLine": false,
"targets": [
{
"groupBy": [
{
"params": [
"$__interval"
],
"type": "time"
},
{
"params": [
"null"
],
"type": "fill"
}
],
"orderByTime": "ASC",
"policy": "default",
"query": "f = (r, accumulator) => ({\n _value: accumulator._value + (if r._value == \"AvailableState\" then 1 else if r._value == \"DownState\" then -1 else 0)\n })\n\nfrom(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._field == \"state\")\n |> group(columns: [\"tardis_machine_name\"])\n |> window(every: $__interval)\n |> reduce(fn: f, identity: {_value: 0})\n |> duplicate(column: \"_stop\", as: \"_time\")\n |> window(every: inf, timeColumn: \"_time\")\n |> yield()",
"queryType": "randomWalk",
"refId": "A",
"resultFormat": "time_series",
"select": [
[
{
"params": [
"value"
],
"type": "field"
},
{
"params": [],
"type": "mean"
}
]
],
"tags": []
}
],
"thresholds": [],
"timeFrom": null,
"timeRegions": [],
"timeShift": null,
"title": "node fluctuation",
"tooltip": {
"shared": true,
"sort": 0,
"value_type": "individual"
},
"type": "graph",
"xaxis": {
"buckets": null,
"mode": "time",
"name": null,
"show": true,
"values": []
},
"yaxes": [
{
"format": "short",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
},
{
"format": "short",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
}
],
"yaxis": {
"align": false,
"alignLevel": null
}
},
{
"aliasColors": {},
"bars": false,
"dashLength": 10,
"dashes": false,
"datasource": "InfluxDB",
"fieldConfig": {
"defaults": {},
"overrides": []
},
"fill": 1,
"fillGradient": 0,
"gridPos": {
"h": 8,
"w": 12,
"x": 12,
"y": 10
},
"hiddenSeries": false,
"id": 10,
"interval": "1s",
"legend": {
"avg": false,
"current": false,
"max": false,
"min": false,
"show": true,
"total": false,
"values": false
},
"lines": true,
"linewidth": 1,
"maxDataPoints": null,
"nullPointMode": "null",
"options": {
"alertThreshold": true
},
"percentage": false,
"pluginVersion": "7.5.7",
"pointradius": 2,
"points": false,
"renderer": "flot",
"seriesOverrides": [],
"spaceLength": 10,
"stack": false,
"steppedLine": false,
"targets": [
{
"groupBy": [
{
"params": [
"$__interval"
],
"type": "time"
},
{
"params": [
"null"
],
"type": "fill"
}
],
"orderByTime": "ASC",
"policy": "default",
"query": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._measurement == \"tardis_pipeline\")\n |> filter(fn: (r) => r._field == \"utilisation\" or r._field == \"allocation\")\n |> keep(columns: [\"_time\", \"_measurement\", \"_field\", \"_value\", \"tardis_machine_name\"])\n |> aggregateWindow(every: $__interval, fn: mean)\n |> yield()",
"queryType": "randomWalk",
"refId": "A",
"resultFormat": "time_series",
"select": [
[
{
"params": [
"value"
],
"type": "field"
},
{
"params": [],
"type": "mean"
}
]
],
"tags": []
}
],
"thresholds": [],
"timeFrom": null,
"timeRegions": [],
"timeShift": null,
"title": "pipeline (utilization/allocation)",
"tooltip": {
"shared": true,
"sort": 0,
"value_type": "individual"
},
"type": "graph",
"xaxis": {
"buckets": null,
"mode": "time",
"name": null,
"show": true,
"values": []
},
"yaxes": [
{
"format": "short",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
},
{
"format": "short",
"label": null,
"logBase": 1,
"max": null,
"min": null,
"show": true
}
],
"yaxis": {
"align": false,
"alignLevel": null
}
}
],
"refresh": "5s",
"schemaVersion": 27,
"style": "dark",
"tags": [],
"templating": {
"list": [
{
"allValue": null,
"current": {
"selected": false,
"text": "cobald-xvmcqc",
"value": "cobald-xvmcqc"
},
"datasource": "InfluxDB",
"definition": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> keep(columns: [\"tardis_machine_name\", \"_time\"])\n |> sort(columns: [\"_time\"], desc: true)\n |> unique(column: \"tardis_machine_name\")",
"description": null,
"error": null,
"hide": 0,
"includeAll": false,
"label": null,
"multi": false,
"name": "machine",
"options": [],
"query": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> keep(columns: [\"tardis_machine_name\", \"_time\"])\n |> sort(columns: [\"_time\"], desc: true)\n |> unique(column: \"tardis_machine_name\")",
"refresh": 2,
"regex": "",
"skipUrlSync": false,
"sort": 0,
"tagValuesQuery": "",
"tags": [],
"tagsQuery": "",
"type": "query",
"useTags": false
}
]
},
"time": {
"from": "now-5m",
"to": "now"
},
"timepicker": {},
"timezone": "",
"title": "cobald",
"uid": "urDuvE6Gk",
"version": 2
}
roles/cobald/files/influxdb-dashboard-cobald.json
-794
View File
@@ -1,794 +0,0 @@
{
"meta": {
"version": "1",
"type": "dashboard",
"name": "cobald-Template",
"description": "template created from dashboard: cobald"
},
"content": {
"data": {
"type": "dashboard",
"attributes": {
"name": "cobald",
"description": ""
},
"relationships": {
"label": {
"data": []
},
"cell": {
"data": [
{
"type": "cell",
"id": "07900a722c363000"
},
{
"type": "cell",
"id": "07900a7236f63000"
},
{
"type": "cell",
"id": "07900a723cf63000"
},
{
"type": "cell",
"id": "07900a7243f63000"
},
{
"type": "cell",
"id": "079e694f29581000"
},
{
"type": "cell",
"id": "079e6e037c181000"
}
]
},
"variable": {
"data": []
}
}
},
"included": [
{
"id": "07900a722c363000",
"type": "cell",
"attributes": {
"x": 4,
"y": 0,
"w": 4,
"h": 4
},
"relationships": {
"view": {
"data": {
"type": "view",
"id": "07900a722c363000"
}
}
}
},
{
"id": "07900a7236f63000",
"type": "cell",
"attributes": {
"x": 0,
"y": 0,
"w": 4,
"h": 4
},
"relationships": {
"view": {
"data": {
"type": "view",
"id": "07900a7236f63000"
}
}
}
},
{
"id": "07900a723cf63000",
"type": "cell",
"attributes": {
"x": 4,
"y": 4,
"w": 4,
"h": 4
},
"relationships": {
"view": {
"data": {
"type": "view",
"id": "07900a723cf63000"
}
}
}
},
{
"id": "07900a7243f63000",
"type": "cell",
"attributes": {
"x": 0,
"y": 4,
"w": 4,
"h": 4
},
"relationships": {
"view": {
"data": {
"type": "view",
"id": "07900a7243f63000"
}
}
}
},
{
"id": "079e694f29581000",
"type": "cell",
"attributes": {
"x": 8,
"y": 0,
"w": 4,
"h": 4
},
"relationships": {
"view": {
"data": {
"type": "view",
"id": "079e694f29581000"
}
}
}
},
{
"id": "079e6e037c181000",
"type": "cell",
"attributes": {
"x": 8,
"y": 4,
"w": 4,
"h": 4
},
"relationships": {
"view": {
"data": {
"type": "view",
"id": "079e6e037c181000"
}
}
}
},
{
"type": "view",
"id": "07900a722c363000",
"attributes": {
"name": "nodes running",
"properties": {
"shape": "chronograf-v2",
"queries": [
{
"text": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._field == \"state\")\n |> group()\n |> window(every: 10s)\n |> reduce(fn: (r, accumulator) => ({\n _value: accumulator._value + (\n if r._value == \"AvailableState\" then 1 \n else if r._value == \"DownState\" then -1 \n else 0)\n }), identity: {_value: 0})\n |> duplicate(column: \"_stop\", as: \"_time\")\n |> window(every: inf) //, timeColumn: \"_time\")\n |> cumulativeSum()\n// |> reduce(fn: (r, accumulator) => ({r with x: r._value * 2}), identity: {x:0})\n// |> map(fn: (r) => ({r with vnew: r._value*2}))\n// |> integral(unit: 10s, timeColumn: \"_stop\")\n// |> window(every: inf) //, timeColumn: \"_stop\")\n |> yield()",
"editMode": "advanced",
"name": "",
"builderConfig": {
"buckets": [],
"tags": [
{
"key": "_measurement",
"values": [],
"aggregateFunctionType": "filter"
}
],
"functions": [
{
"name": "mean"
}
],
"aggregateWindow": {
"period": "auto",
"fillValues": false
}
}
}
],
"axes": {
"x": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
},
"y": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
}
},
"type": "xy",
"legend": {},
"geom": "line",
"colors": [
{
"id": "9b960932-18d9-4f57-80ba-24998a06613d",
"type": "scale",
"hex": "#31C0F6",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "c1742651-0d5e-4148-b9c0-92beb642417a",
"type": "scale",
"hex": "#A500A5",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "756fa8cb-9d9c-4e45-9a4f-f2b106b0216a",
"type": "scale",
"hex": "#FF7E27",
"name": "Nineteen Eighty Four",
"value": 0
}
],
"note": "",
"showNoteWhenEmpty": false,
"xColumn": "_time",
"generateXAxisTicks": [],
"xTotalTicks": 0,
"xTickStart": 0,
"xTickStep": 0,
"yColumn": "_value",
"generateYAxisTicks": [],
"yTotalTicks": 0,
"yTickStart": 0,
"yTickStep": 0,
"shadeBelow": false,
"position": "overlaid",
"timeFormat": "",
"hoverDimension": "auto",
"legendColorizeRows": true,
"legendOpacity": 1,
"legendOrientationThreshold": 100000000
}
}
},
{
"type": "view",
"id": "07900a7236f63000",
"attributes": {
"name": "Name this Cell",
"properties": {
"shape": "chronograf-v2",
"queries": [
{
"text": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r[\"tardis_machine_name\"] == \"678162c190d5\")\n |> window(every: 10s)\n |> count()\n |> duplicate(column: \"_stop\", as: \"_time\")\n |> window(every: inf)\n |> yield()",
"editMode": "advanced",
"name": "",
"builderConfig": {
"buckets": [],
"tags": [
{
"key": "_measurement",
"values": [],
"aggregateFunctionType": "filter"
}
],
"functions": [
{
"name": "mean"
}
],
"aggregateWindow": {
"period": "auto",
"fillValues": false
}
}
}
],
"axes": {
"x": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
},
"y": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
}
},
"type": "xy",
"legend": {},
"geom": "line",
"colors": [
{
"id": "2566435b-7ee0-4222-8ac0-b7f14ab783d9",
"type": "scale",
"hex": "#31C0F6",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "9263bcff-35a0-4025-bacd-68a1bef54784",
"type": "scale",
"hex": "#A500A5",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "2f04bd8c-2203-4be6-bc34-c25720d24379",
"type": "scale",
"hex": "#FF7E27",
"name": "Nineteen Eighty Four",
"value": 0
}
],
"note": "",
"showNoteWhenEmpty": false,
"xColumn": "_time",
"generateXAxisTicks": [],
"xTotalTicks": 0,
"xTickStart": 0,
"xTickStep": 0,
"yColumn": "_value",
"generateYAxisTicks": [],
"yTotalTicks": 0,
"yTickStart": 0,
"yTickStep": 0,
"shadeBelow": false,
"position": "overlaid",
"timeFormat": "",
"hoverDimension": "auto",
"legendColorizeRows": true,
"legendOpacity": 1,
"legendOrientationThreshold": 100000000
}
}
},
{
"type": "view",
"id": "07900a723cf63000",
"attributes": {
"name": "node fluctuation",
"properties": {
"shape": "chronograf-v2",
"queries": [
{
"text": "f = (r, accumulator) => ({\n _value: accumulator._value + (if r._value == \"AvailableState\" then 1 else if r._value == \"DownState\" then -1 else 0)\n })\n\nfrom(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._field == \"state\")\n |> group()\n |> window(every: 10s)\n |> reduce(fn: f, identity: {_value: 0})\n |> duplicate(column: \"_stop\", as: \"_time\")\n |> window(every: inf, timeColumn: \"_time\")\n |> yield()",
"editMode": "advanced",
"name": "",
"builderConfig": {
"buckets": [],
"tags": [
{
"key": "_measurement",
"values": [],
"aggregateFunctionType": "filter"
}
],
"functions": [
{
"name": "mean"
}
],
"aggregateWindow": {
"period": "auto",
"fillValues": false
}
}
}
],
"axes": {
"x": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
},
"y": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
}
},
"type": "xy",
"legend": {},
"geom": "line",
"colors": [
{
"id": "9b960932-18d9-4f57-80ba-24998a06613d",
"type": "scale",
"hex": "#31C0F6",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "c1742651-0d5e-4148-b9c0-92beb642417a",
"type": "scale",
"hex": "#A500A5",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "756fa8cb-9d9c-4e45-9a4f-f2b106b0216a",
"type": "scale",
"hex": "#FF7E27",
"name": "Nineteen Eighty Four",
"value": 0
}
],
"note": "",
"showNoteWhenEmpty": false,
"xColumn": "_time",
"generateXAxisTicks": [],
"xTotalTicks": 0,
"xTickStart": 0,
"xTickStep": 0,
"yColumn": "_value",
"generateYAxisTicks": [],
"yTotalTicks": 0,
"yTickStart": 0,
"yTickStep": 0,
"shadeBelow": false,
"position": "overlaid",
"timeFormat": "",
"hoverDimension": "auto",
"legendColorizeRows": true,
"legendOpacity": 1,
"legendOrientationThreshold": 100000000
}
}
},
{
"type": "view",
"id": "07900a7243f63000",
"attributes": {
"name": "states",
"properties": {
"shape": "chronograf-v2",
"queries": [
{
"text": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._field == \"state\")\n |> group(columns: [\"_value\"], mode: \"by\")\n |> duplicate(column: \"_value\", as: \"state\")\n |> window(every: 10s)\n |> count(column: \"state\")\n |> rename(columns: {\"_value\": \"_field\", \"state\": \"_value\"})\n |> group(columns: [\"_field\"])\n |> yield()",
"editMode": "advanced",
"name": "",
"builderConfig": {
"buckets": [],
"tags": [
{
"key": "_measurement",
"values": [],
"aggregateFunctionType": "filter"
}
],
"functions": [
{
"name": "mean"
}
],
"aggregateWindow": {
"period": "auto",
"fillValues": false
}
}
}
],
"axes": {
"x": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
},
"y": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
}
},
"type": "xy",
"legend": {},
"geom": "line",
"colors": [
{
"id": "9b960932-18d9-4f57-80ba-24998a06613d",
"type": "scale",
"hex": "#31C0F6",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "c1742651-0d5e-4148-b9c0-92beb642417a",
"type": "scale",
"hex": "#A500A5",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "756fa8cb-9d9c-4e45-9a4f-f2b106b0216a",
"type": "scale",
"hex": "#FF7E27",
"name": "Nineteen Eighty Four",
"value": 0
}
],
"note": "",
"showNoteWhenEmpty": false,
"xColumn": "_stop",
"generateXAxisTicks": [],
"xTotalTicks": 0,
"xTickStart": 0,
"xTickStep": 0,
"yColumn": "_value",
"generateYAxisTicks": [],
"yTotalTicks": 0,
"yTickStart": 0,
"yTickStep": 0,
"shadeBelow": false,
"position": "overlaid",
"timeFormat": "",
"hoverDimension": "auto",
"legendColorizeRows": true,
"legendOpacity": 1,
"legendOrientationThreshold": 100000000
}
}
},
{
"type": "view",
"id": "079e694f29581000",
"attributes": {
"name": "pipeline (demand / supply)",
"properties": {
"shape": "chronograf-v2",
"queries": [
{
"text": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._measurement == \"tardis_pipeline\")\n |> filter(fn: (r) => r._field == \"demand\" or r._field == \"supply\")\n// |> filter(fn: (r) => r._field == \"state\")\n// |> group()\n// |> window(every: 10s)\n// |> duplicate(column: \"_stop\", as: \"_time\")\n// |> window(every: inf) //, timeColumn: \"_time\")\n// |> cumulativeSum()\n |> yield()",
"editMode": "advanced",
"name": "",
"builderConfig": {
"buckets": [],
"tags": [
{
"key": "_measurement",
"values": [],
"aggregateFunctionType": "filter"
}
],
"functions": [
{
"name": "mean"
}
],
"aggregateWindow": {
"period": "auto",
"fillValues": false
}
}
}
],
"axes": {
"x": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
},
"y": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
}
},
"type": "xy",
"legend": {},
"geom": "line",
"colors": [
{
"id": "4ef29481-ecf3-4a09-b0f5-e34e8d3e50b5",
"type": "scale",
"hex": "#31C0F6",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "719de04a-f70f-4c54-a1bb-982a9d13dbae",
"type": "scale",
"hex": "#A500A5",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "8d5c1f25-3801-4cdd-ad40-b8e2e78342a0",
"type": "scale",
"hex": "#FF7E27",
"name": "Nineteen Eighty Four",
"value": 0
}
],
"note": "",
"showNoteWhenEmpty": false,
"xColumn": "_time",
"generateXAxisTicks": [],
"xTotalTicks": 0,
"xTickStart": 0,
"xTickStep": 0,
"yColumn": "_value",
"generateYAxisTicks": [],
"yTotalTicks": 0,
"yTickStart": 0,
"yTickStep": 0,
"shadeBelow": false,
"position": "overlaid",
"timeFormat": "",
"hoverDimension": "auto",
"legendColorizeRows": true,
"legendOpacity": 1,
"legendOrientationThreshold": 100000000
}
}
},
{
"type": "view",
"id": "079e6e037c181000",
"attributes": {
"name": "pipeline (Utilization / Allocation)",
"properties": {
"shape": "chronograf-v2",
"queries": [
{
"text": "from(bucket: \"batleth\")\n |> range(start: v.timeRangeStart, stop: v.timeRangeStop)\n |> filter(fn: (r) => r._measurement == \"tardis_pipeline\")\n |> filter(fn: (r) => r._field == \"utilisation\" or r._field == \"allocation\")\n// |> filter(fn: (r) => r._field == \"state\")\n// |> group()\n// |> window(every: 10s)\n// |> duplicate(column: \"_stop\", as: \"_time\")\n// |> window(every: inf) //, timeColumn: \"_time\")\n// |> cumulativeSum()\n |> yield()",
"editMode": "advanced",
"name": "",
"builderConfig": {
"buckets": [],
"tags": [
{
"key": "_measurement",
"values": [],
"aggregateFunctionType": "filter"
}
],
"functions": [
{
"name": "mean"
}
],
"aggregateWindow": {
"period": "auto",
"fillValues": false
}
}
}
],
"axes": {
"x": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
},
"y": {
"bounds": [
"",
""
],
"label": "",
"prefix": "",
"suffix": "",
"base": "10",
"scale": "linear"
}
},
"type": "xy",
"legend": {},
"geom": "line",
"colors": [
{
"id": "4ef29481-ecf3-4a09-b0f5-e34e8d3e50b5",
"type": "scale",
"hex": "#31C0F6",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "719de04a-f70f-4c54-a1bb-982a9d13dbae",
"type": "scale",
"hex": "#A500A5",
"name": "Nineteen Eighty Four",
"value": 0
},
{
"id": "8d5c1f25-3801-4cdd-ad40-b8e2e78342a0",
"type": "scale",
"hex": "#FF7E27",
"name": "Nineteen Eighty Four",
"value": 0
}
],
"note": "",
"showNoteWhenEmpty": false,
"xColumn": "_time",
"generateXAxisTicks": [],
"xTotalTicks": 0,
"xTickStart": 0,
"xTickStep": 0,
"yColumn": "_value",
"generateYAxisTicks": [],
"yTotalTicks": 0,
"yTickStart": 0,
"yTickStep": 0,
"shadeBelow": false,
"position": "overlaid",
"timeFormat": "",
"hoverDimension": "auto",
"legendColorizeRows": true,
"legendOpacity": 1,
"legendOrientationThreshold": 100000000
}
}
}
]
},
"labels": []
}
roles/cobald/files/influxdb.repo
-6
View File
@@ -1,6 +0,0 @@
[influxdb]
name = InfluxDB Repository - RHEL \$releasever
baseurl = https://repos.influxdata.com/rhel/\$releasever/\$basearch/stable
enabled = 1
gpgcheck = 1
gpgkey = https://repos.influxdata.com/influxdb.key
roles/cobald/files/init-cobaldmodules.sh
-5
View File
@@ -1,5 +0,0 @@
#!/bin/sh
[ -f /usr/local/lib/cobaldmodules/setup.py -a \
-d /usr/local/lib/cobaldmodules/cobaldmodules ] && \
pip3 install --no-deps --editable /usr/local/lib/cobaldmodules
roles/cobald/files/slurm-slurmd.def
-31
View File
@@ -1,31 +0,0 @@
Bootstrap: docker-daemon
From: slurm:slurmd
%files
31-slurmd-configless /etc/docker-init.d/31-slurm-configless
/container/volumes/munge/munge.key /etc/munge/munge.key
cgroup.conf.noautomount /etc/slurm/cgroup.conf
%post
rm /etc/docker-init.d/30-slurmd
chmod 755 /etc/docker-init.d/31-slurm-configless
%startscript
if [ -z "${1}" -o -z "${2}" ] ; then
echo "undefined variables slurmctld or nodename"
exit 1
fi
export slurmctld="${1}"
export nodename="${2}"
echo ${slurmctld} ${nodename} ${SLURMD_LOG_PATH} ${SLURM_SCHED_LOG_PATH}
exec /usr/local/sbin/entrypoint.sh /usr/local/sbin/docker-init
%runscript
if [ -z "${1}" -o -z "${2}" ] ; then
echo "undefined variables slurmctld or nodename"
exit 1
fi
export slurmctld="${1}"
export nodename="${2}"
echo ${slurmctld} ${nodename} ${SLURMD_LOG_PATH} ${SLURM_SCHED_LOG_PATH}
exec /usr/local/sbin/entrypoint.sh /usr/local/sbin/docker-init
roles/cobald/files/start-drone
-59
View File
@@ -1,59 +0,0 @@
#!/bin/sh
#SBATCH -D /shared
export
echo $@
nodename=$(hostname | awk '{ print "drone" substr($1,match($1, "([[:digit:]]+)")) }')
SHUTDOWN_DONE=0
function handler_quit(){
[ $SHUTDOWN_DONE -ne 0 ] && return
set -x
echo "drain container"
scontrol update NodeName=${nodename} State=DRAIN Reason="cobald node quit"
shutdown_jobs=$(squeue -w ${nodename} --noheader -O jobid)
[ -n "${shutdown_jobs}" ] && scancel ${shutdown_jobs}
#scancel -w ${nodename}
i=$(( $(scontrol show config | grep KillWait | \
sed 's/^KillWait.*= \([0-9]*\) sec/\1/') - 2 ))
while [ -n "$(squeue -w ${nodename} --noheader -O jobid)" -o ${i} -lt 1 ]
do
i=$(( ${i} - 1 ))
sleep 1
done
scancel -s KILL -w ${nodename} # hard kill all remaining jobs
echo "shutdown container"
scontrol update NodeName=${nodename} State=DOWN Reason=shutdown
singularity instance stop slurm-drone
scontrol update NodeName=${nodename} State=FUTURE
umount /inner-cgroup/freezer
umount /inner-cgroup
SHUTDOWN_DONE=1
exit 0
}
# set -x
trap handler_quit EXIT
echo "mounting cgroups"
mkdir /inner-cgroup
mount -t tmpfs none /inner-cgroup
mkdir /inner-cgroup/freezer/
mount --bind /sys/fs/cgroup/freezer/slurm/ /inner-cgroup/freezer/
mount -o remount,ro /inner-cgroup
echo "starting ${nodename}"
scontrol update NodeName=${nodename} State=RESUME # revoke last DRAIN
scontrol update NodeName=${nodename} State=FUTURE
singularity instance start \
-B /inner-cgroup/:/sys/fs/cgroup/ \
--writable-tmpfs /shared/slurmd.sif slurm-drone \
slurm-ctl ${nodename}
# scontrol update NodeName=${nodename} NodeHostname=${SLURM_JOB_ID}
scontrol update NodeName=${nodename} NodeHostname=${TardisDroneUuid}
if [ $? -eq 0 ] ; then
echo "container started, sleeping $(( 60 * ${SLURM_Walltime} - 2 ))"
sleep $(( 60 * ${SLURM_Walltime} - 2 ))
fi
handler_quit
roles/cobald/files/telegraf.Dockerfile
-8
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@@ -1,8 +0,0 @@
FROM centos:7
COPY influxdb.repo /etc/yum.repos.d/influxdb.repo
RUN yum -y install telegraf &&\
yum clean all && rm -rf /var/cache/yum
CMD telegraf
roles/cobald/library/TODO.md
-11
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@@ -1,11 +0,0 @@
# Tests
ANSIBLE_LIBRARY=. ansible -m influx_bucket -a "base='http://192.168.122.140:28086' org='my-org' auth_token='87-fEnSlQldFi1T_CLHsrHxH-T9VKey-qzUbVH6tmR2QzL4oZzbUPwzS1wzOoIkyfmyGbRv75yLjYfztxziivw==' name='bucky' description='test 123'" localhost -vvv
ANSIBLE_LIBRARY=. ansible -m influx_token -a "base='http://192.168.122.140:28086' org='my-org' auth_token='87-fEnSlQldFi1T_CLHsrHxH-T9VKey-qzUbVH6tmR2QzL4oZzbUPwzS1wzOoIkyfmyGbRv75yLjYfztxziivw==' key='foo' description='test 123' permissions=\"{{'[{\\\"action\\\": \\\"write\\\",\\\"resource\\\": {\\\"type\\\": \\\"buckets\\\"} }]'|from_json}}\"" localhost -vvv
ANSIBLE_LIBRARY=. ansible -m influx_dashboard -create -a "base='http://192.168.122.140:28086' org='my-org' token='2Mji-PvTzgn2oie5p36pJ-vxqWCnxczMWGrnYz2nUHj6Q6XvdIGiLPmK4DjX16KGhOjxQ5dWymDusE8qJrhFFg==' data='{{lookup(\"file\", \"../files/influxdb-dashboard-cobald.json\")}}'" localhost -vvv
Missing: lot of stuff, e.g. missing tokens, invalid data like bucket instead of buckets ...
# TODO
* tests
* state (present/absent)
* `module_utils/urls.py` (https://github.com/ansible/ansible/blob/devel/lib/ansible/module_utils/urls.py)
* see module notes
roles/cobald/library/influx_bucket.py
-161
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@@ -1,161 +0,0 @@
#!/usr/bin/env python
import requests
from ansible.module_utils.basic import AnsibleModule
DOCUMENTATION = r'''
---
module: influx2_bucket
short_description: create bucket in influxdb2
description: create bucket in influxdb2
notes:
- just works with influxdb version 2
- does not remove buckets
- no way to configure data retention
options:
base:
description: URL for path, e.g. `https://localhost:8086`
type: str
required: True
org:
description: influxdb2 organisation
type: str
required: True
auth_token:
description: influxdb2 authentication token
type: str
required: True
name:
description: name of the bucket
type: str
required: True
force:
description: force creation even if bucket already exists
(adds a new one)
type: bool
required: False
default: False
author:
- Thorsten M. (@thoto)
'''
EXAMPLES = r'''
- name: "fetch auth token"
raw: influx auth list --user my-user --hide-headers | cut -f 3
register: influx_token_fetch
delegate_to: ed-influxdb-2
- name: "create bucket"
influx_bucket:
base: "http://localhost:8086"
org: "my-org"
token: "{{influx_token_fetch.stdout_lines[0]}}"
name: "bucky"
'''
def get_org_id(base, org_name, h):
ro = requests.get("{base}/api/v2/orgs".format(base=base), headers=h,
json={"org": org_name})
ro.raise_for_status()
org_id = [o["id"] for o in ro.json()["orgs"] if o["name"] == org_name]
return org_id[0]
class Bucket:
def __init__(self, base, h, org, description, name):
self.base = base
self.h = h
self.org_id = get_org_id(base, org, h)
self.description = description
self.name = name
self.result = None
self.f = None
def check(self):
ra = requests.get("{base}/api/v2/buckets".format(
base=self.base),
params={"orgID": self.org_id, "name": self.name},
headers=self.h)
if ra.status_code == 404:
# orgID + name -> 404 on empty set. Just name -> 200 but buckets=[]
x = []
else:
ra.raise_for_status()
x = [i for i in ra.json()["buckets"]
if self.name == i["name"] and i["orgID"] == self.org_id]
assert(len(x) == 1 or len(x) == 0)
update = None
if len(x) == 0: # create
self.result = None
self.f = lambda: self._create({
"orgID": self.org_id,
"description": self.description if self.description else None,
"name": self.name,
"retentionRules": []
})
else:
self.result = x[0]
if self.description == x[0].get("description", ""):
return False # everything matches -> no change needed
else:
self.result = x[0]
update = {"id": x[0]["id"],
"description": self.description}
self.f = lambda: self._update(**update)
return True
def run(self):
if not self.f:
self.check()
self.f()
def _update(self, id, description):
ra = requests.patch(
"{base}/api/v2/buckets/{id}".format(
base=self.base, id=id),
headers=self.h, json={"description": description})
ra.raise_for_status()
return ra
def _create(self, data):
ra = requests.post("{base}/api/v2/buckets".format(base=self.base),
headers=self.h, json=data)
ra.raise_for_status()
self.result = ra.json()
return ra
if __name__ == "__main__":
result = dict(changed=False, message="")
module = AnsibleModule(
argument_spec=dict(
base=dict(type="str", required=True),
org=dict(type="str", required=True),
auth_token=dict(type="str", required=True),
name=dict(type="str", required=True),
description=dict(type="str", default=""),
force=dict(type="bool", default=False),
),
supports_check_mode=True
)
h = {"Authorization": "Token {token}".format(
token=module.params["auth_token"])}
b = Bucket(module.params["base"], h, org=module.params["org"],
description=module.params["description"],
name=module.params["name"])
changed = b.check()
if b.result:
result['bucket_id'] = b.result["id"]
result['changed'] = changed
if module.check_mode:
module.exit_json(**result)
if changed or module.params["force"]:
b.run()
result['bucket_id'] = b.result["id"]
module.exit_json(**result)
roles/cobald/library/influx_dashboard.py
-147
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@@ -1,147 +0,0 @@
#!/usr/bin/env python
import json
import requests
from ansible.module_utils.basic import AnsibleModule
DOCUMENTATION = r'''
---
module: influx2_dashboard
short_description: create dashboard in influxdb2
description: create dashboard in influxdb2
notes:
- just works with influxdb version 2
- does not create dashboard description
- does not update dashboards
- just creates a dashboard if it does not exist.
options:
base:
description: URL for path, e.g. `https://localhost:8086`
type: str
required: True
org:
description: influxdb2 organisation
type: str
required: True
auth_token:
description: influxdb2 authentication token
type: str
required: True
data:
description: exported dashboard json file
type: json
required: True
force:
description: force creation even if dashboard already exists
(adds a new one)
type: bool
required: False
default: False
author:
- Thorsten M. (@thoto)
'''
EXAMPLES = r'''
- name: "fetch auth token"
raw: influx auth list --user my-user --hide-headers | cut -f 3
register: influx_token_fetch
delegate_to: ed-influxdb-2
- name: "create dashboard"
influx_dashboard:
base: "http://localhost:8086"
org: "my-org"
auth_token: "{{influx_token_fetch.stdout_lines[0]}}"
data: "{{lookup('file', 'influxdb-dashboard-cobald.json')}}"
'''
def parse_dashboard_template(data):
j = json.loads(data)
return {
'name': j["content"]["data"]["attributes"]["name"],
'cells': {i["relationships"]["view"]["data"]["id"]: i["attributes"]
for i in j["content"]["included"] if i["type"] == "cell"},
'views': {i["id"]: i["attributes"]
for i in j["content"]["included"] if i["type"] == "view"},
}
def get_auth(base, org_name, token):
h = {"Authorization": "Token {token}".format(token=token)}
rm = requests.get("{base}/api/v2/me".format(base=base), headers=h)
rm.raise_for_status()
# me_name = rm.json()["name"]
me = rm.json()["id"]
ro = requests.get("{base}/api/v2/orgs".format(base=base), headers=h,
json={"userID": me})
ro.raise_for_status()
org_id = [o["id"] for o in ro.json()["orgs"] if o["name"] == org_name]
return {"org_id": org_id[0], "org_name": org_name, "uid": me, "h": h}
def check(base, auth, dashboard):
h = auth["h"]
rd = requests.get("{base}/api/v2/dashboards".format(base=base), headers=h)
rd.raise_for_status()
x = [i for i in rd.json()["dashboards"]
if i["name"] == dashboard["name"] and i["orgID"] == auth["org_id"]]
return len(x) == 0, x
def create(base, auth, dashboard):
h = auth["h"]
# create dashboard
rd = requests.post("{base}/api/v2/dashboards".format(base=base), headers=h,
json={"orgID": auth["org_id"],
"name": dashboard["name"]})
rd.raise_for_status()
dash_id = rd.json()["id"]
for k, v in dashboard["cells"].items():
# create cells in dashboard
rc = requests.post(
"{base}/api/v2/dashboards/{dash_id}/cells".format(
base=base, dash_id=dash_id),
headers=h, json=v)
rc.raise_for_status()
cell_id = rc.json()["id"]
# create view of cell in dashboard
rv = requests.patch(
"{base}/api/v2/dashboards/{dash_id}/cells/{cell_id}/view".format(
base=base, dash_id=dash_id, cell_id=cell_id),
headers=h, json=dashboard["views"][k])
rv.raise_for_status()
if __name__ == "__main__":
result = dict(changed=False, message="")
module = AnsibleModule(
argument_spec=dict(
base=dict(type="str", required=True),
org=dict(type="str", required=True),
auth_token=dict(type="str", required=True),
data=dict(type="json", required=True),
force=dict(type="bool", default=False),
),
supports_check_mode=True
)
dashboard = parse_dashboard_template(module.params["data"])
auth = get_auth(module.params["base"], module.params["org"],
module.params["auth_token"])
changed, x = check(module.params["base"], auth, dashboard)
result['changed'] = changed
if module.check_mode:
module.exit_json(**result)
if changed or module.params["force"]:
create(module.params["base"], auth, dashboard)
module.exit_json(**result)
roles/cobald/library/influx_token.py
-232
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@@ -1,232 +0,0 @@
#!/usr/bin/env python
import requests
from ansible.module_utils.basic import AnsibleModule
DOCUMENTATION = r'''
---
module: influx2_token
short_description: generate token via influxdb2 api
description: generate token via influxdb2 api
notes:
- just works with influxdb version 2
- needs token to authenticate against API (use
`influx auth list --user my-user --hide-headers | cut -f 3`
- tokens may not be removed
- permissions can not be updated. a new token is created and the old
one is not removed.
options:
base:
description: URL for path, e.g. `https://localhost:8086`
type: str
required: True
org:
description: influxdb2 organisation
type: str
required: True
auth_token:
description: influxdb2 authentication token
type: str
required: True
key:
description: some key used to identify token. This is put into
the tokens description
type: str
required: True
description:
description: textual description for token. key gets appended
type: str
required: False
permissions:
description: list of permissions, each dict(action, resource)
type: list
required: True
force:
description: force creation even if dashboard already exists
(adds a new one)
type: bool
required: False
default: False
author:
- Thorsten M. (@thoto)
'''
EXAMPLES = r'''
- name: "fetch auth token"
raw: influx auth list --user my-user --hide-headers | cut -f 3
register: influx_token_fetch
delegate_to: ed-influxdb-2
- name: "create dashboard"
influx_token:
base: "http://localhost:8086"
org: "my-org"
auth_token: "{{influx_token_fetch.stdout_lines[0]}}"
key: "foo123"
description: "token for foo key"
permissions:
- action: "write"
resource:
type: "buckets"
register: ed-influx-token
- debug: msg="Token: {{ed-influx-token.token}}"
'''
def get_org_id(base, org_name, h):
ro = requests.get("{base}/api/v2/orgs".format(base=base), headers=h,
json={"org": org_name})
ro.raise_for_status()
org_id = [o["id"] for o in ro.json()["orgs"] if o["name"] == org_name]
return org_id[0]
def marker(key):
return "__ANSIBLE_TOKEN_{key}__".format(key=key)
def _filter_perms(perms):
for r in perms:
r["resource"] = {k: v for k, v in r["resource"].items() if v}
return perms
class Token:
def __init__(self, base, h, data):
self.base = base
self.h = h
self.marker = marker(data["key"])
self.org_id = data["org_id"]
self.perms = _filter_perms(data["perms"])
self.description = data["description"]+" "+self.marker
self.result_token = None
self.f = None
def check(self):
ra = requests.get("{base}/api/v2/authorizations".format(
base=self.base),
params={"orgID": self.org_id},
headers=self.h)
ra.raise_for_status()
update = None
for i in ra.json()["authorizations"]:
if self.marker not in i["description"] \
or i["orgID"] != self.org_id:
continue
if self._match_perms(self.perms, i["permissions"]):
self.result_token = i
if self.description == i["description"]:
return False # everything matches -> no change needed
else:
update = {"auth_id": i["id"],
"description": self.description}
# TODO: may remove token because permissions do not match?
if update:
self.f = lambda: self._update(**update)
else:
self.result_token = None
self.f = lambda: self._create({
"orgID": self.org_id,
"description": self.description,
"permissions": self.perms
})
return True
def run(self):
if not self.f:
self.check()
self.f()
def _match_perms(self, pa, pb):
def g(match, lst):
for idx, i in enumerate(lst):
if i['action'] != match['action']:
continue
for k, v in match['resource'].items():
if k not in i['resource'] or i['resource'][k] != v:
continue
else: # first best match
return idx
else:
raise ValueError
b = [b.copy() for b in pb]
for i in pa:
try:
b.pop(g(i, b))
except ValueError:
return False # permission i not present in b
if b: # not empty
return False # some permissions in b not in a
return True
def _update(self, auth_id, description):
ra = requests.patch(
"{base}/api/v2/authorizations/{auth_id}".format(
base=self.base, auth_id=auth_id),
headers=self.h, json={"description": description})
ra.raise_for_status()
return ra
def _create(self, data):
ra = requests.post("{base}/api/v2/authorizations".format(
base=self.base),
headers=self.h, json=data)
ra.raise_for_status()
self.result_token = ra.json()
return ra
if __name__ == "__main__":
result = dict(changed=False, message="")
module = AnsibleModule(
argument_spec=dict(
base=dict(type="str", required=True),
org=dict(type="str", required=True),
auth_token=dict(type="str", required=True),
key=dict(type="str", required=True),
description=dict(type="str", default=""),
permissions=dict(type="list", elements='dict', options=dict(
action=dict(type='str', choices=['read', 'write'],
required=True),
resource=dict(type='dict', options=dict(
id=dict(type='str'),
name=dict(type='str'),
org=dict(type='str'),
orgID=dict(type='str'),
type=dict(type='str', required=True, choices=[
"authorizations", "buckets", "dashboards", "orgs",
"sources", "tasks", "telegrafs", "users", "variables",
"scrapers", "secrets", "labels", "views", "documents",
"notificationRules", "notificationEndpoints", "checks",
"dbrp", "flows", "annotations", "functions"]),
), required=True),
), required=True),
force=dict(type="bool", default=False),
),
supports_check_mode=True
)
h = {"Authorization": "Token {token}".format(
token=module.params["auth_token"])}
t = Token(module.params["base"], h, {
"org_id": get_org_id(module.params["base"], module.params["org"], h),
"key": module.params["key"],
"perms": module.params["permissions"],
"description": module.params["description"]})
changed = t.check()
if t.result_token:
result['token'] = t.result_token["token"]
result['changed'] = changed
if module.check_mode:
module.exit_json(**result)
if changed or module.params["force"]:
t.run()
result['token'] = t.result_token["token"]
module.exit_json(**result)
roles/cobald/tasks/dockerimage-generic.yml
-34
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@@ -1,34 +0,0 @@
- file:
path: "/container/docker-images/cobald.{{cobald_image_tag|default('latest')}}/"
state: directory
owner: "{{unpriv_user}}"
group: docker
- template:
src: cobald.Dockerfile
dest: "/container/docker-images/cobald.{{cobald_image_tag|default('latest')}}/Dockerfile"
owner: "{{unpriv_user}}"
group: docker
register: cobald_cp_dockerfile
- copy:
src: "{{item}}"
dest: "/container/docker-images/cobald.{{cobald_image_tag|default('latest')}}/{{item}}"
owner: "{{unpriv_user}}"
group: docker
mode: 0755
with_items:
- cobald-entrypoint.sh
- init-cobaldmodules.sh
register: cobald_cp_files
- docker_image:
name: "cobald"
tag: "{{cobald_image_tag|default('latest')}}"
# pull: False
build:
pull: False
path: "/container/docker-images/cobald.{{cobald_image_tag|default('latest')}}/"
source: build
force_source: "{{cobald_cp_dockerfile.changed or cobald_cp_files.changed}}"
roles/cobald/tasks/facts.yml
-11
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@@ -1,11 +0,0 @@
- block:
- docker_container_info:
name: "{{ container_name | mandatory }}"
register: cobald_container_info
- set_fact:
cobald_container_hostname: |-
{{cobald_container_info.container.Config.Hostname | default('cobald-'+
lookup('password', '/dev/null chars=ascii_lowercase length=6')) }}
when: cobald_container_hostname is not defined
roles/cobald/tasks/grafana.yml
-54
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@@ -1,54 +0,0 @@
- name: create influx token for grafana
influx_token:
base: "http://localhost:{{influx_pubport}}"
org: "my-org"
auth_token: "{{influx_admin_token}}"
description: grafana read access
key: grafana
permissions:
- action: read
resource:
type: buckets
register: influx_grafana_token
- name: run grafana
docker_container:
name: ed-grafana
image: docker.io/grafana/grafana:7.5.7
hostname: ed-grafana
domainname: cobald.local
networks:
- name: "{{cobald_docker_network}}"
networks_cli_compatible: True
published_ports:
- "3000:3000"
state: started
detach: True
cleanup: True
- wait_for:
host: localhost
port: 3000
- community.grafana.grafana_datasource:
grafana_url: http://localhost:3000
grafana_user: admin
grafana_password: admin
name: InfluxDB
ds_type: influxdb
ds_url: "{{influx_url}}"
additional_json_data:
defaultBucket: "{{influx_bucket}}"
organization: "{{influx_org}}"
version: Flux
additional_secure_json_data:
token: "{{influx_grafana_token.token}}"
- community.grafana.grafana_dashboard:
grafana_url: http://localhost:3000
grafana_user: admin
grafana_password: admin
state: present
commit_message: updated by ansible
overwrite: yes
json_data: "{{lookup('file', 'grafana-dashboard.json')|from_json}}"
roles/cobald/tasks/influxdb.yml
-76
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@@ -1,76 +0,0 @@
- name: run influxdb in docker container
docker_container:
name: ed-influxdb
image: docker.io/library/influxdb:2.0
hostname: "{{cobald_influx_hostname}}"
domainname: "{{cobald_domainname}}"
networks:
- name: "{{ cobald_docker_network }}"
networks_cli_compatible: True
published_ports:
- "{{influx_pubport}}:8086"
volumes:
- "ed-influxdb-data:/var/lib/influxdb2"
- "ed-influxdb-config:/etc/influxdb2"
- "/container/volumes/influxdb-backup/:/backup"
env:
DOCKER_INFLUXDB_INIT_MODE: setup
DOCKER_INFLUXDB_INIT_USERNAME: "{{influx_admin_user}}"
DOCKER_INFLUXDB_INIT_PASSWORD: "{{influx_admin_pw}}"
DOCKER_INFLUXDB_INIT_ORG: "{{influx_org}}"
DOCKER_INFLUXDB_INIT_BUCKET: my-bucket
state: started
detach: True
cleanup: True
- name: add ansible connection to influxdb container
add_host:
name: ed-influxdb
ansible_connection: docker
ansible_docker_extra_args: "-H=ssh://{{ansible_host}}"
changed_when: False
- name: wait for influx to run
raw: until curl http://localhost:8086 ; do sleep 1 ; done
changed_when: False
delegate_to: ed-influxdb
- name: fetch influxdb auth token
raw: influx auth list --user my-user --hide-headers --json
register: influx_token_fetch
changed_when: False
delegate_to: ed-influxdb
- name: set influxdb admin token
set_fact:
influx_admin_token:
"{{(influx_token_fetch.stdout | from_json | first).token}}"
- name: create influxdb bucket for cobald
influx_bucket:
base: "http://localhost:{{influx_pubport}}"
org: "my-org"
auth_token: "{{influx_admin_token}}"
name: "{{influx_bucket}}"
- name: create influxdb dashboard
influx_dashboard:
base: "http://localhost:{{influx_pubport}}"
org: "my-org"
auth_token: "{{influx_admin_token}}"
data: "{{lookup('file', 'influxdb-dashboard-cobald.json')}}"
when: influxdb_dashboard | default(True)
- name: create influxdb write access token for telegraf
influx_token:
base: "http://localhost:{{influx_pubport}}"
org: "my-org"
auth_token: "{{influx_admin_token}}"
description: cobald tardis telegraf monitoring plugin
key: telegraf_cobaldtardis
permissions:
- action: write
resource:
type: buckets
name: "{{influx_bucket}}"
register: influx_telegraf_token
roles/cobald/tasks/main.yml
-149
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@@ -1,149 +0,0 @@
- include_vars: cobald-slurm.yml
when: cobald_slurm | default(False)
tags: always
- name: build cobald:slurm docker image
include_role:
name: slurm
tasks_from: dockerimage
vars:
slurm_image_prefix: cobald
image_name: "{{cobald_image_tag}}"
dockerfile: "{{ lookup('template', 'cobald.Dockerfile') }}"
files_list:
- cobald-entrypoint.sh
- init-cobaldmodules.sh
- start-drone
- 28-sync-container-slurmd
files: "
{%- set files = [] -%} {%- for i in files_list -%}
{%- set files = files.append(
{ 'dest': i, 'content': lookup('file', i) }) -%}
{%- endfor %}{{ files }}"
when: cobald_slurm | default(False)
- name: build generic cobald docker image
include_tasks: dockerimage-generic.yml
when: not (cobald_slurm | default(False))
- name: make cobald data volume
file:
path: "/container/volumes/cobald/"
state: directory
owner: "{{unpriv_user}}"
group: docker
- name: copy cobald config
copy:
src: cobald-config/
dest: "~{{unpriv_user}}/cobald/"
force: False
owner: "{{unpriv_user}}"
group: docker
mode: "0644"
- name: ensure network for cobald container exists
docker_network:
name: "{{cobald_docker_network}}"
state: present
# docker run -v $(pwd)/cobald-config-host:/etc/cobald -v $(pwd)/cobald:/cobald --rm -it cobald bash
- name: install git
yum:
name: git
state: present
- name: make directories for cobald configuration and modules
file:
path: "{{item}}"
owner: "{{unpriv_user}}"
group: "{{unpriv_user}}"
mode: "a=rx,u=rwx"
state: directory
with_items:
- "~{{unpriv_user}}/cobald/modules"
- "~{{unpriv_user}}/cobald"
- name: clone cobald code from git
git:
repo: https://github.com/thoto/cobald
dest: "~{{unpriv_user}}/cobald-src"
version: bugfix/mixed_construction_methods
update: no # FIXME
become: yes
become_user: "{{unpriv_user}}"
register: cobald_git_pull
- name: clone tardis code from git
git:
repo: https://github.com/MatterMiners/tardis
dest: "~{{unpriv_user}}/tardis-src"
version: master
update: no # FIXME
become: yes
become_user: "{{unpriv_user}}"
register: tardis_git_pull
- name: "get unpriv_user {{unpriv_user}} uid and gid"
getent:
database: passwd
key: "{{unpriv_user}}"
- name: run pip install on cobald and tardis
docker_container:
image: "cobald:{{cobald_image_tag|default('latest')}}"
name: "cobald-src-{{item.name}}-install"
volumes:
- "~{{unpriv_user}}/{{item.name}}-src:/usr/local/src/{{item.name}}:rw"
state: started
detach: False
cleanup: True
user: "{{getent_passwd[unpriv_user][1]}}:{{getent_passwd[unpriv_user][2]}}"
entrypoint: ""
command: |
bash -c 'HOME=/tmp pip3 install --editable /usr/local/src/{{item.name}}'
with_items:
- name: cobald
run: "{{cobald_git_pull.changed}}"
- name: tardis
run: "{{tardis_git_pull.changed}}"
when: item.run
- import_tasks: telegraf.yml
- name: get cobald hostname
include_tasks: facts.yml
when: cobald_container_hostname is not defined
- name: build singularity container
include_tasks:
file: singularity.yml
apply:
tags: singularity
tags: singularity
- name: run cobald container
docker_container:
name: "{{ container_name | default('cobald') }}"
image: "cobald:{{cobald_image_tag|default('latest')}}"
hostname: "{{cobald_container_hostname}}"
domainname: "{{ cobald_domainname | default('cobald.local')}}"
volumes: "{{default_mounts + cobald_mounts }}"
networks:
- name: "{{cobald_docker_network}}"
networks_cli_compatible: True
state: started
detach: True
cleanup: True
interactive: True
# command: python3 -m cobald.daemon /etc/cobald/config.yaml
vars:
default_mounts: "{{cobald_slurm_mounts | default([])}}"
cobald_mounts:
- "~{{unpriv_user}}/cobald:/etc/cobald"
# - /container/volumes/cobald:/etc/cobald:ro
- "/container/docker-images/sing-slurmd/build/:/slurm-singimage/:ro"
- "~{{unpriv_user}}/cobald/modules:/usr/local/src/cobaldmodules"
- "~{{unpriv_user}}/cobald-src:/usr/local/src/cobald:ro"
- "~{{unpriv_user}}/tardis-src:/usr/local/src/tardis:ro"
roles/cobald/tasks/singularity.yml
-48
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@@ -1,48 +0,0 @@
- name: setup singularity
import_role: name="singularity"
tags: singularity
- name: make singularity image build directory
file:
state: directory
path: "{{item}}"
owner: "{{unpriv_user}}"
group: "docker"
mode: "0755"
loop:
- /container/docker-images/sing-slurmd
- /container/docker-images/sing-slurmd/cache
- /container/docker-images/sing-slurmd/build
- name: copy slurm singularity container files
copy:
src: "{{item}}"
dest: "/container/docker-images/sing-slurmd/{{item}}"
owner: "{{unpriv_user}}"
group: "docker"
loop:
- slurm-slurmd.def
- 31-slurmd-configless
- cgroup.conf.noautomount
register: cobald_copy_sing_files
- name: remove old container
file:
path: /container/docker-images/sing-slurmd/build/slurmd.sif
state: absent
when: cobald_copy_sing_files.changed
- name: build container
shell:
chdir: /container/docker-images/sing-slurmd/
cmd: SINGULARITY_TMPDIR=/container/docker-images/sing-slurmd/cache
singularity build --disable-cache
/container/docker-images/sing-slurmd/build/slurmd.sif
/container/docker-images/sing-slurmd/slurm-slurmd.def
creates: /container/docker-images/sing-slurmd/build/slurmd.sif
register: cobald_sing_build
- debug: msg="{{[cobald_sing_build.stdout, cobald_sing_build.stderr]}}"
tags: [ never, debug ]
# TODO: trigger copy in cobald container when slurmd.sif rebuilt
roles/cobald/tasks/telegraf.yml
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@@ -1,69 +0,0 @@
- name: setup directories for telegraf
file:
path: "/container/{{item}}/telegraf/"
state: directory
owner: "{{unpriv_user}}"
group: docker
loop:
- docker-images
- volumes
- name: copy telegraf Dockerfile
copy:
src: telegraf.Dockerfile
dest: /container/docker-images/telegraf/Dockerfile
owner: "{{unpriv_user}}"
group: docker
register: cobald_cp_telegraf_dockerfile
- name: copy telegraf repo file
copy: # telegraf is found in influxdb repo
src: influxdb.repo
dest: /container/docker-images/telegraf/influxdb.repo
owner: "{{unpriv_user}}"
group: docker
- name: docker image for telegraf
docker_image:
name: "ed-telegraf"
build:
pull: False
path: "/container/docker-images/telegraf/"
source: build
force_source: "{{cobald_cp_telegraf_dockerfile.changed}}"
- import_tasks: influxdb.yml
tags: influxdb
- name: generate telegraf config
template:
src: telegraf.conf.j2
dest: /container/volumes/telegraf/telegraf.conf
owner: "{{unpriv_user}}"
group: docker
vars:
influx_token: "{{influx_telegraf_token.token}}"
influx_url: "http://{{cobald_influx_hostname}}:8086"
register: telegraf_config_gen
- name: run telegraf container
docker_container:
name: ed-telegraf
image: ed-telegraf
hostname: telegraf
domainname: "{{ cobald_domainname }}"
networks:
- name: "{{ cobald_docker_network }}"
aliases: ["ed-telegraf"]
volumes:
- "/container/volumes/telegraf/telegraf.conf:/etc/telegraf/telegraf.conf:ro"
state: started
recreate: "{{ telegraf_config_gen.changed | default(False) | bool }}"
detach: True
# cleanup: True
networks_cli_compatible: True
- import_tasks: grafana.yml
vars:
influx_url: "http://{{cobald_influx_hostname}}:8086"
tags: influxdb
roles/cobald/templates/cobald.Dockerfile
-73
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@@ -1,73 +0,0 @@
FROM {{ cobald_docker_base_image | default("docker.io/library/centos:7") }}
RUN yum update -y && \
yum install -y python3 git && pip3 install --upgrade pip && \
yum clean all && rm -rf /var/cache/yum
ARG REPOCOBALD=https://github.com/MatterMiners/cobald
ARG REPOTARDIS=https://github.com/MatterMiners/tardis
RUN git clone $REPOCOBALD /usr/local/src/cobald && \
git clone $REPOTARDIS /usr/local/src/tardis
RUN mkdir /etc/cobald /var/log/cobald && \
( getent passwd cobald > /dev/null || \
useradd -m -d /var/lib/cobald --no-log-init --system cobald ) && \
chown cobald:cobald /var/log/cobald
#RUN mkdir /cobald && python3 -m venv /cobald && source /cobald/bin/activate &&\
# pip3 install --upgrade pip && pip3 install cobald
RUN mkdir /usr/local/src/cobaldmodules /usr/local/lib/cobaldmodules && \
ln -s /usr/local/src/cobaldmodules/setup.py \
/usr/local/lib/cobaldmodules/setup.py && \
ln -s /usr/local/src/cobaldmodules/cobaldmodules \
/usr/local/lib/cobaldmodules/cobaldmodules && \
chown cobald:cobald /usr/local/lib/cobaldmodules
RUN pip3 install --editable /usr/local/src/cobald && \
pip3 install --editable /usr/local/src/cobald[contrib]
RUN pip3 install --editable /usr/local/src/tardis&& \
pip3 install --editable /usr/local/src/tardis[contrib]
ENV PYTHONPATH=/usr/local/src/cobaldmodules
# pip3 install --editable .
# pip3 install --editable .[contrib]
# pip3 install --upgrade --editable /etc/cobald/modules/
# su cobald -c "python3 -m cobald.daemon /etc/cobald/config.yaml"
VOLUME /usr/local/src/cobaldmodules
VOLUME /etc/cobald
RUN mkdir -p /usr/local/lib/entrypoints.d/
COPY init-cobaldmodules.sh /usr/local/lib/entrypoints.d/50-init-cobaldmodules.sh
RUN chmod 755 /usr/local/lib/entrypoints.d/50-init-cobaldmodules.sh
COPY start-drone /usr/local/bin/start-drone
COPY 28-sync-container-slurmd /etc/docker-init.d/28-sync-container-slurmd
RUN chmod 755 /usr/local/bin/start-drone /etc/docker-init.d/28-sync-container-slurmd
RUN echo -e "#!/bin/sh\npython3 -m cobald.daemon /etc/cobald/config.yaml" >> /etc/docker-init.d/70-cobald && chmod 755 /etc/docker-init.d/70-cobald
{% if cobald_docker_default_command | default(True) -%}
COPY cobald-entrypoint.sh /usr/local/sbin/cobald-entrypoint.sh
RUN chmod 755 /usr/local/sbin/cobald-entrypoint.sh
ENTRYPOINT [ "/usr/local/sbin/cobald-entrypoint.sh" ]
RUN yum -y install iproute &&\
yum clean all && rm -rf /var/cache/yum
USER cobald
STOPSIGNAL SIGINT
# CMD "python3 -m cobald.daemon /etc/cobald/config.yaml"
CMD /etc/docker-init.d/60-cobald
{%- endif %}
roles/cobald/templates/telegraf.conf.j2
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roles/cobald/vars/cobald-slurm.yml
-12
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@@ -1,12 +0,0 @@
cobald_image_tag: slurm
cobald_docker_base_image: "{{slurm.base_image}}"
cobald_docker_default_command: False
cobald_docker_network: "{{slurm.network}}"
cobald_domainname: "{{slurm.domain}}"
cobald_slurm_mounts: "{{slurm.mounts}}"
#- /container/volumes/slurm/:/etc/slurm/:rw
##- "{{slurm_cfg_path | mandatory}}:/etc/slurm/:rw"
#- /container/volumes/munge/munge.key:/etc/munge/munge.key:rw
## - "{{slurm_munge_path | mandatory}}:/etc/munge/munge.key:rw"
#- slurm-shared:/shared/:rw
## - "{{slurm_shared_path | mandatory}}:{{slurm_shared_target | default('/shared')}}:rw"
roles/cobald/vars/main.yml
-2
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@@ -1,2 +0,0 @@
cobald_docker_network: "{{docker_network}}"
cobald_influx_hostname: "ed-influxdb"
roles/docker-htcondor/files/conf/cm/config.d/50-condor-centralmanager
-3
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@@ -1,3 +0,0 @@
use ROLE:centralmanager
# ALLOW_WRITE per default on * -> following has no effect yet
ALLOW_WRITE_COLLECTOR=$(ALLOW_WRITE) condor-exec.htc.local condor-sub.htc.local
roles/docker-htcondor/files/conf/common/condor_config
-92
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@@ -1,92 +0,0 @@
######################################################################
##
## condor_config
##
## This is the global configuration file for condor. This is where
## you define where the local config file is. Any settings
## made here may potentially be overridden in the local configuration
## file. KEEP THAT IN MIND! To double-check that a variable is
## getting set from the configuration file that you expect, use
## condor_config_val -v <variable name>
##
## condor_config.annotated is a more detailed sample config file
##
## Unless otherwise specified, settings that are commented out show
## the defaults that are used if you don't define a value. Settings
## that are defined here MUST BE DEFINED since they have no default
## value.
##
######################################################################
## Where have you installed the bin, sbin and lib condor directories?
RELEASE_DIR = /usr
## Where is the local condor directory for each host? This is where the local config file(s), logs and
## spool/execute directories are located. this is the default for Linux and Unix systems.
LOCAL_DIR = /var
## Where is the machine-specific local config file for each host?
# LOCAL_CONFIG_FILE = /etc/condor/condor_config.local
LOCAL_CONFIG_FILE = /etc/condor/condor_config_$(HOSTNAME).local
## If your configuration is on a shared file system, then this might be a better default
#LOCAL_CONFIG_FILE = $(RELEASE_DIR)/etc/$(HOSTNAME).local
## If the local config file is not present, is it an error? (WARNING: This is a potential security issue.)
REQUIRE_LOCAL_CONFIG_FILE = false
## The normal way to do configuration with RPMs is to read all of the
## files in a given directory that don't match a regex as configuration files.
## Config files are read in lexicographic order.
LOCAL_CONFIG_DIR = /etc/condor/config.d
#LOCAL_CONFIG_DIR_EXCLUDE_REGEXP = ^((\..*)|(.*~)|(#.*)|(.*\.rpmsave)|(.*\.rpmnew))$
##
## Do NOT use host-based security by default.
##
## This was the default for the 8.8 series (and earlier), but it is
## intrinsically insecure. To make the 9.0 series secure by default, we
## commented it out.
##
## You should seriously consider improving your security configuration.
##
## To continue to use your old security configuration, knowing that it is
## insecure, add the line 'use SECURITY : HOST_BASED' to your local
## configuration directory. Don't just uncomment the final line in this
## comment block; changes in this file may be lost during your next upgrade.
## The following shell command will make the change on most Linux systems.
##
## echo 'use SECURITY : HOST_BASED' >> $(condor_config_val LOCAL_CONFIG_DIR)/00-insecure.config
##
## To expand your condor pool beyond a single host, set ALLOW_WRITE to match all of the hosts
#ALLOW_WRITE = *.cs.wisc.edu
## FLOCK_FROM defines the machines that grant access to your pool via flocking. (i.e. these machines can join your pool).
#FLOCK_FROM =
## FLOCK_TO defines the central managers that your schedd will advertise itself to (i.e. these pools will give matches to your schedd).
#FLOCK_TO = condor.cs.wisc.edu, cm.example.edu
##--------------------------------------------------------------------
## Values set by the rpm patch script:
##--------------------------------------------------------------------
## For Unix machines, the path and file name of the file containing
## the pool password for password authentication.
#SEC_PASSWORD_FILE = $(LOCAL_DIR)/lib/condor/pool_password
## Pathnames
RUN = $(LOCAL_DIR)/run/condor
LOG = $(LOCAL_DIR)/log/condor
LOCK = $(LOCAL_DIR)/lock/condor
SPOOL = $(LOCAL_DIR)/lib/condor/spool
EXECUTE = $(LOCAL_DIR)/lib/condor/execute
BIN = $(RELEASE_DIR)/bin
LIB = $(RELEASE_DIR)/lib64/condor
INCLUDE = $(RELEASE_DIR)/include/condor
SBIN = $(RELEASE_DIR)/sbin
LIBEXEC = $(RELEASE_DIR)/libexec/condor
SHARE = $(RELEASE_DIR)/share/condor
PROCD_ADDRESS = $(RUN)/procd_pipe
JAVA_CLASSPATH_DEFAULT = $(SHARE) .
## Install the minicondor package to run HTCondor on a single node
roles/docker-htcondor/files/conf/common/condor_ssh_to_job_sshd_config_template
-64
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@@ -1,64 +0,0 @@
HostKey _INSERT_HOST_KEY_
AuthorizedKeysFile _INSERT_AUTHORIZED_KEYS_FILE_
# The following option is not supported by all recent versions of OpenSSH,
# so instead we rely on injection of the shell setup command in the authorized
# keys file.
#ForceCommand _INSERT_FORCE_COMMAND_
# as a convenience to users, allow remote setting of environment
# since sshd is running as the job uid, there isn't really a security concern
AcceptEnv *
Subsystem sftp /usr/libexec/openssh/sftp-server
# prevent sshd from freaking out about reading files from inside
# a tmp-like directory
StrictModes no
# Rejection by tcp wrappers is not logged at INFO or VERBOSE log levels,
# so to make diagnosis of problems easier, we use DEBUG.
LogLevel DEBUG
X11Forwarding yes
# By default, OpenSSH uses the ipv6 loopback even if ipv6 is disabled in the
# kernel. This forces OpenSSH to use the "local" network instead
X11UseLocalhost no
# The following settings are recommended for good security.
# In particular, only FIPS 140-2 algorithms are used.
# URLs for extra information re FIPS security compliance:
# https://rhel7stig.readthedocs.io/en/latest/
# https://www.stigviewer.com/stig/red_hat_enterprise_linux_7/
# https://people.redhat.com/swells/scap-security-guide/tables/table-rhel7-stig-manual.html
#-FIPS High Severity
Protocol 2
PermitEmptyPasswords no
#-FIPS Medium Severity
# Note: Ciphers and MACs below will be incompatible with RHEL5 or earlier.
Ciphers aes128-ctr,aes192-ctr,aes256-ctr
MACs hmac-sha2-256,hmac-sha2-512
PermitRootLogin no
PermitUserEnvironment no
GSSAPIAuthentication no
KerberosAuthentication no
HostbasedAuthentication no
IgnoreRhosts yes
IgnoreUserKnownHosts yes
PrintLastLog yes
UsePrivilegeSeparation sandbox
Compression delayed
#-Recommended for security, but left out ssh_to_job config
# because they provide minimal value and are likely to annoy
# users or generate needless warnings in the ssh_to_job setting.
#
# ClientAliveInterval 600 # Note: condor_submit -i sets TMOUT
# ClientAliveCountMax 0
# banner=/etc/issue # Set to your warning banner
# StrictModes yes # Can't set due to tmp-like directory
# RhostsRSAAuthentication no # Obsolete Protocol version 1 option
roles/docker-htcondor/files/conf/common/config.d/00-htcondor-9.0.config
-26
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@@ -1,26 +0,0 @@
##
## Default security settings
##
## Host-based security was the default for the 8.8 series (and earlier).
##
## Host-based security assumes that all users on a machine are trusted.
## For example, if host-based security trusts that a given machine can
## run jobs, then any user who can start a process on that machine can
## start a startd that can "steal" jobs from the system.
#
## To help make HTCondor secure by default, we removed host-based security
## from the default configuration file
## (/etc/condor/condor_config).
##
## New installations of HTCondor should be made using the get_htcondor tool,
## which can automatically establish IDTOKENS-based security across a multi-
## node pool. For existing installations, we recommend you
## consider improving your security configuration.
##
## To continue to use your old security configuration,
## comment out the 'recommended' line below, and uncomment the
## 'host_based' line.
##
# use security : host_based
use security : recommended_v9_0
roles/docker-htcondor/files/conf/common/config.d/20-common.config
-1
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@@ -1 +0,0 @@
CONDOR_HOST = condor-cm.htc.local
roles/docker-htcondor/files/conf/common/ganglia.d/00_default_metrics
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roles/docker-htcondor/files/conf/exec/config.d/50-condor-exec
-1
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@@ -1 +0,0 @@
use ROLE:execute
roles/docker-htcondor/files/conf/sub/config.d/50-condor-submit
-1
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@@ -1 +0,0 @@
use ROLE:submit
roles/docker-htcondor/files/htcondor.Dockerfile
-11
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@@ -1,11 +0,0 @@
FROM docker.io/library/centos:7
RUN yum install -y https://research.cs.wisc.edu/htcondor/repo/8.9/htcondor-release-current.el7.noarch.rpm && \
yum install --nogpgcheck -y condor && \
yum install -y less && \
yum clean all
RUN yum install -y iproute bind-utils nmap-ncat net-tools && \
yum clean all
CMD bash -c 'cat <({ condor_master -f & tail --retry --pid $! -f /var/log/condor/MasterLog & })'
roles/docker-htcondor/library/copy_2.py
-793
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@@ -1,793 +0,0 @@
#!/usr/bin/python
# -*- coding: utf-8 -*-
# Copyright: (c) 2012, Michael DeHaan <michael.dehaan@gmail.com>
# Copyright: (c) 2017, Ansible Project
# GNU General Public License v3.0+ (see COPYING or https://www.gnu.org/licenses/gpl-3.0.txt)
from __future__ import absolute_import, division, print_function
__metaclass__ = type
ANSIBLE_METADATA = {'metadata_version': '1.1',
'status': ['stableinterface'],
'supported_by': 'core'}
DOCUMENTATION = r'''
---
module: copy
version_added: historical
short_description: Copy files to remote locations
description:
- The C(copy) module copies a file from the local or remote machine to a location on the remote machine.
- Use the M(fetch) module to copy files from remote locations to the local box.
- If you need variable interpolation in copied files, use the M(template) module. Using a variable in the C(content)
field will result in unpredictable output.
- For Windows targets, use the M(win_copy) module instead.
options:
src:
description:
- Local path to a file to copy to the remote server.
- This can be absolute or relative.
- If path is a directory, it is copied recursively. In this case, if path ends
with "/", only inside contents of that directory are copied to destination.
Otherwise, if it does not end with "/", the directory itself with all contents
is copied. This behavior is similar to the C(rsync) command line tool.
type: path
content:
description:
- When used instead of C(src), sets the contents of a file directly to the specified value.
- Works only when C(dest) is a file. Creates the file if it does not exist.
- For advanced formatting or if C(content) contains a variable, use the M(template) module.
type: str
version_added: '1.1'
dest:
description:
- Remote absolute path where the file should be copied to.
- If C(src) is a directory, this must be a directory too.
- If C(dest) is a non-existent path and if either C(dest) ends with "/" or C(src) is a directory, C(dest) is created.
- If I(dest) is a relative path, the starting directory is determined by the remote host.
- If C(src) and C(dest) are files, the parent directory of C(dest) is not created and the task fails if it does not already exist.
type: path
required: yes
backup:
description:
- Create a backup file including the timestamp information so you can get the original file back if you somehow clobbered it incorrectly.
type: bool
default: no
version_added: '0.7'
force:
description:
- Influence whether the remote file must always be replaced.
- If C(yes), the remote file will be replaced when contents are different than the source.
- If C(no), the file will only be transferred if the destination does not exist.
- Alias C(thirsty) has been deprecated and will be removed in 2.13.
type: bool
default: yes
aliases: [ thirsty ]
version_added: '1.1'
mode:
description:
- The permissions of the destination file or directory.
- For those used to C(/usr/bin/chmod) remember that modes are actually octal numbers.
You must either add a leading zero so that Ansible's YAML parser knows it is an octal number
(like C(0644) or C(01777))or quote it (like C('644') or C('1777')) so Ansible receives a string
and can do its own conversion from string into number. Giving Ansible a number without following
one of these rules will end up with a decimal number which will have unexpected results.
- As of Ansible 1.8, the mode may be specified as a symbolic mode (for example, C(u+rwx) or C(u=rw,g=r,o=r)).
- As of Ansible 2.3, the mode may also be the special string C(preserve).
- C(preserve) means that the file will be given the same permissions as the source file.
type: path
directory_mode:
description:
- When doing a recursive copy set the mode for the directories.
- If this is not set we will use the system defaults.
- The mode is only set on directories which are newly created, and will not affect those that already existed.
type: raw
version_added: '1.5'
remote_src:
description:
- Influence whether C(src) needs to be transferred or already is present remotely.
- If C(no), it will search for C(src) at originating/master machine.
- If C(yes) it will go to the remote/target machine for the C(src).
- C(remote_src) supports recursive copying as of version 2.8.
- C(remote_src) only works with C(mode=preserve) as of version 2.6.
type: bool
default: no
version_added: '2.0'
follow:
description:
- This flag indicates that filesystem links in the destination, if they exist, should be followed.
type: bool
default: no
version_added: '1.8'
local_follow:
description:
- This flag indicates that filesystem links in the source tree, if they exist, should be followed.
type: bool
default: yes
version_added: '2.4'
checksum:
description:
- SHA1 checksum of the file being transferred.
- Used to validate that the copy of the file was successful.
- If this is not provided, ansible will use the local calculated checksum of the src file.
type: str
version_added: '2.5'
extends_documentation_fragment:
- decrypt
- files
- validate
notes:
- The M(copy) module recursively copy facility does not scale to lots (>hundreds) of files.
seealso:
- module: assemble
- module: fetch
- module: file
- module: synchronize
- module: template
- module: win_copy
author:
- Ansible Core Team
- Michael DeHaan
'''
EXAMPLES = r'''
- name: Copy file with owner and permissions
copy:
src: /srv/myfiles/foo.conf
dest: /etc/foo.conf
owner: foo
group: foo
mode: '0644'
- name: Copy file with owner and permission, using symbolic representation
copy:
src: /srv/myfiles/foo.conf
dest: /etc/foo.conf
owner: foo
group: foo
mode: u=rw,g=r,o=r
- name: Another symbolic mode example, adding some permissions and removing others
copy:
src: /srv/myfiles/foo.conf
dest: /etc/foo.conf
owner: foo
group: foo
mode: u+rw,g-wx,o-rwx
- name: Copy a new "ntp.conf file into place, backing up the original if it differs from the copied version
copy:
src: /mine/ntp.conf
dest: /etc/ntp.conf
owner: root
group: root
mode: '0644'
backup: yes
- name: Copy a new "sudoers" file into place, after passing validation with visudo
copy:
src: /mine/sudoers
dest: /etc/sudoers
validate: /usr/sbin/visudo -csf %s
- name: Copy a "sudoers" file on the remote machine for editing
copy:
src: /etc/sudoers
dest: /etc/sudoers.edit
remote_src: yes
validate: /usr/sbin/visudo -csf %s
- name: Copy using inline content
copy:
content: '# This file was moved to /etc/other.conf'
dest: /etc/mine.conf
- name: If follow=yes, /path/to/file will be overwritten by contents of foo.conf
copy:
src: /etc/foo.conf
dest: /path/to/link # link to /path/to/file
follow: yes
- name: If follow=no, /path/to/link will become a file and be overwritten by contents of foo.conf
copy:
src: /etc/foo.conf
dest: /path/to/link # link to /path/to/file
follow: no
'''
RETURN = r'''
dest:
description: Destination file/path
returned: success
type: str
sample: /path/to/file.txt
src:
description: Source file used for the copy on the target machine
returned: changed
type: str
sample: /home/httpd/.ansible/tmp/ansible-tmp-1423796390.97-147729857856000/source
md5sum:
description: MD5 checksum of the file after running copy
returned: when supported
type: str
sample: 2a5aeecc61dc98c4d780b14b330e3282
checksum:
description: SHA1 checksum of the file after running copy
returned: success
type: str
sample: 6e642bb8dd5c2e027bf21dd923337cbb4214f827
backup_file:
description: Name of backup file created
returned: changed and if backup=yes
type: str
sample: /path/to/file.txt.2015-02-12@22:09~
gid:
description: Group id of the file, after execution
returned: success
type: int
sample: 100
group:
description: Group of the file, after execution
returned: success
type: str
sample: httpd
owner:
description: Owner of the file, after execution
returned: success
type: str
sample: httpd
uid:
description: Owner id of the file, after execution
returned: success
type: int
sample: 100
mode:
description: Permissions of the target, after execution
returned: success
type: str
sample: 0644
size:
description: Size of the target, after execution
returned: success
type: int
sample: 1220
state:
description: State of the target, after execution
returned: success
type: str
sample: file
'''
import errno
import filecmp
import grp
import os
import os.path
import platform
import pwd
import shutil
import stat
import tempfile
import traceback
from ansible.module_utils.basic import AnsibleModule
from ansible.module_utils.common.process import get_bin_path
from ansible.module_utils._text import to_bytes, to_native
from ansible.module_utils.six import PY3
# The AnsibleModule object
module = None
class AnsibleModuleError(Exception):
def __init__(self, results):
self.results = results
# Once we get run_command moved into common, we can move this into a common/files module. We can't
# until then because of the module.run_command() method. We may need to move it into
# basic::AnsibleModule() until then but if so, make it a private function so that we don't have to
# keep it for backwards compatibility later.
def clear_facls(path):
setfacl = get_bin_path('setfacl', True)
# FIXME "setfacl -b" is available on Linux and FreeBSD. There is "setfacl -D e" on z/OS. Others?
acl_command = [setfacl, '-b', path]
b_acl_command = [to_bytes(x) for x in acl_command]
rc, out, err = module.run_command(b_acl_command, environ_update=dict(LANG='C', LC_ALL='C', LC_MESSAGES='C'))
if rc != 0:
raise RuntimeError('Error running "{0}": stdout: "{1}"; stderr: "{2}"'.format(' '.join(b_acl_command), out, err))
def split_pre_existing_dir(dirname):
'''
Return the first pre-existing directory and a list of the new directories that will be created.
'''
head, tail = os.path.split(dirname)
b_head = to_bytes(head, errors='surrogate_or_strict')
if head == '':
return ('.', [tail])
if not os.path.exists(b_head):
if head == '/':
raise AnsibleModuleError(results={'msg': "The '/' directory doesn't exist on this machine."})
(pre_existing_dir, new_directory_list) = split_pre_existing_dir(head)
else:
return (head, [tail])
new_directory_list.append(tail)
return (pre_existing_dir, new_directory_list)
def adjust_recursive_directory_permissions(pre_existing_dir, new_directory_list, module, directory_args, changed):
'''
Walk the new directories list and make sure that permissions are as we would expect
'''
if new_directory_list:
working_dir = os.path.join(pre_existing_dir, new_directory_list.pop(0))
directory_args['path'] = working_dir
changed = module.set_fs_attributes_if_different(directory_args, changed)
changed = adjust_recursive_directory_permissions(working_dir, new_directory_list, module, directory_args, changed)
return changed
def chown_recursive(path, module):
changed = False
owner = module.params['owner']
group = module.params['group']
if owner is not None:
if not module.check_mode:
for dirpath, dirnames, filenames in os.walk(path):
owner_changed = module.set_owner_if_different(dirpath, owner, False)
if owner_changed is True:
changed = owner_changed
for dir in [os.path.join(dirpath, d) for d in dirnames]:
owner_changed = module.set_owner_if_different(dir, owner, False)
if owner_changed is True:
changed = owner_changed
for file in [os.path.join(dirpath, f) for f in filenames]:
owner_changed = module.set_owner_if_different(file, owner, False)
if owner_changed is True:
changed = owner_changed
else:
uid = pwd.getpwnam(owner).pw_uid
for dirpath, dirnames, filenames in os.walk(path):
owner_changed = (os.stat(dirpath).st_uid != uid)
if owner_changed is True:
changed = owner_changed
for dir in [os.path.join(dirpath, d) for d in dirnames]:
owner_changed = (os.stat(dir).st_uid != uid)
if owner_changed is True:
changed = owner_changed
for file in [os.path.join(dirpath, f) for f in filenames]:
owner_changed = (os.stat(file).st_uid != uid)
if owner_changed is True:
changed = owner_changed
if group is not None:
if not module.check_mode:
for dirpath, dirnames, filenames in os.walk(path):
group_changed = module.set_group_if_different(dirpath, group, False)
if group_changed is True:
changed = group_changed
for dir in [os.path.join(dirpath, d) for d in dirnames]:
group_changed = module.set_group_if_different(dir, group, False)
if group_changed is True:
changed = group_changed
for file in [os.path.join(dirpath, f) for f in filenames]:
group_changed = module.set_group_if_different(file, group, False)
if group_changed is True:
changed = group_changed
else:
gid = grp.getgrnam(group).gr_gid
for dirpath, dirnames, filenames in os.walk(path):
group_changed = (os.stat(dirpath).st_gid != gid)
if group_changed is True:
changed = group_changed
for dir in [os.path.join(dirpath, d) for d in dirnames]:
group_changed = (os.stat(dir).st_gid != gid)
if group_changed is True:
changed = group_changed
for file in [os.path.join(dirpath, f) for f in filenames]:
group_changed = (os.stat(file).st_gid != gid)
if group_changed is True:
changed = group_changed
return changed
def copy_diff_files(src, dest, module):
changed = False
owner = module.params['owner']
group = module.params['group']
local_follow = module.params['local_follow']
diff_files = filecmp.dircmp(src, dest).diff_files
if len(diff_files):
changed = True
if not module.check_mode:
for item in diff_files:
src_item_path = os.path.join(src, item)
dest_item_path = os.path.join(dest, item)
b_src_item_path = to_bytes(src_item_path, errors='surrogate_or_strict')
b_dest_item_path = to_bytes(dest_item_path, errors='surrogate_or_strict')
if os.path.islink(b_src_item_path) and local_follow is False:
linkto = os.readlink(b_src_item_path)
os.symlink(linkto, b_dest_item_path)
else:
shutil.copyfile(b_src_item_path, b_dest_item_path)
shutil.copymode(b_src_item_path, b_dest_item_path)
if owner is not None:
module.set_owner_if_different(b_dest_item_path, owner, False)
if group is not None:
module.set_group_if_different(b_dest_item_path, group, False)
changed = True
return changed
def copy_left_only(src, dest, module):
changed = False
owner = module.params['owner']
group = module.params['group']
local_follow = module.params['local_follow']
left_only = filecmp.dircmp(src, dest).left_only
if len(left_only):
changed = True
if not module.check_mode:
for item in left_only:
src_item_path = os.path.join(src, item)
dest_item_path = os.path.join(dest, item)
b_src_item_path = to_bytes(src_item_path, errors='surrogate_or_strict')
b_dest_item_path = to_bytes(dest_item_path, errors='surrogate_or_strict')
if os.path.islink(b_src_item_path) and os.path.isdir(b_src_item_path) and local_follow is True:
shutil.copytree(b_src_item_path, b_dest_item_path, symlinks=not(local_follow))
chown_recursive(b_dest_item_path, module)
if os.path.islink(b_src_item_path) and os.path.isdir(b_src_item_path) and local_follow is False:
linkto = os.readlink(b_src_item_path)
os.symlink(linkto, b_dest_item_path)
if os.path.islink(b_src_item_path) and os.path.isfile(b_src_item_path) and local_follow is True:
shutil.copyfile(b_src_item_path, b_dest_item_path)
if owner is not None:
module.set_owner_if_different(b_dest_item_path, owner, False)
if group is not None:
module.set_group_if_different(b_dest_item_path, group, False)
if os.path.islink(b_src_item_path) and os.path.isfile(b_src_item_path) and local_follow is False:
linkto = os.readlink(b_src_item_path)
os.symlink(linkto, b_dest_item_path)
if not os.path.islink(b_src_item_path) and os.path.isfile(b_src_item_path):
shutil.copyfile(b_src_item_path, b_dest_item_path)
shutil.copymode(b_src_item_path, b_dest_item_path)
if owner is not None:
module.set_owner_if_different(b_dest_item_path, owner, False)
if group is not None:
module.set_group_if_different(b_dest_item_path, group, False)
if not os.path.islink(b_src_item_path) and os.path.isdir(b_src_item_path):
shutil.copytree(b_src_item_path, b_dest_item_path, symlinks=not(local_follow))
chown_recursive(b_dest_item_path, module)
changed = True
return changed
def copy_common_dirs(src, dest, module):
changed = False
common_dirs = filecmp.dircmp(src, dest).common_dirs
for item in common_dirs:
src_item_path = os.path.join(src, item)
dest_item_path = os.path.join(dest, item)
b_src_item_path = to_bytes(src_item_path, errors='surrogate_or_strict')
b_dest_item_path = to_bytes(dest_item_path, errors='surrogate_or_strict')
diff_files_changed = copy_diff_files(b_src_item_path, b_dest_item_path, module)
left_only_changed = copy_left_only(b_src_item_path, b_dest_item_path, module)
if diff_files_changed or left_only_changed:
changed = True
# recurse into subdirectory
changed = changed or copy_common_dirs(os.path.join(src, item), os.path.join(dest, item), module)
return changed
def main():
global module
module = AnsibleModule(
# not checking because of daisy chain to file module
argument_spec=dict(
src=dict(type='path'),
_original_basename=dict(type='str'), # used to handle 'dest is a directory' via template, a slight hack
content=dict(type='str', no_log=True),
dest=dict(type='path', required=True),
backup=dict(type='bool', default=False),
force=dict(type='bool', default=True, aliases=['thirsty']),
validate=dict(type='str'),
directory_mode=dict(type='raw'),
remote_src=dict(type='bool'),
local_follow=dict(type='bool'),
checksum=dict(type='str'),
),
add_file_common_args=True,
supports_check_mode=True,
)
if module.params.get('thirsty'):
module.deprecate('The alias "thirsty" has been deprecated and will be removed, use "force" instead', version='2.13')
src = module.params['src']
b_src = to_bytes(src, errors='surrogate_or_strict')
dest = module.params['dest']
# Make sure we always have a directory component for later processing
if os.path.sep not in dest:
dest = '.{0}{1}'.format(os.path.sep, dest)
b_dest = to_bytes(dest, errors='surrogate_or_strict')
backup = module.params['backup']
force = module.params['force']
_original_basename = module.params.get('_original_basename', None)
validate = module.params.get('validate', None)
follow = module.params['follow']
local_follow = module.params['local_follow']
mode = module.params['mode']
owner = module.params['owner']
group = module.params['group']
remote_src = module.params['remote_src']
checksum = module.params['checksum']
if not os.path.exists(b_src):
module.fail_json(msg="Source %s not found" % (src))
if not os.access(b_src, os.R_OK):
module.fail_json(msg="Source %s not readable" % (src))
# Preserve is usually handled in the action plugin but mode + remote_src has to be done on the
# remote host
if module.params['mode'] == 'preserve':
module.params['mode'] = '0%03o' % stat.S_IMODE(os.stat(b_src).st_mode)
mode = module.params['mode']
checksum_dest = None
if os.path.isfile(src):
checksum_src = module.sha1(src)
else:
checksum_src = None
# Backwards compat only. This will be None in FIPS mode
try:
if os.path.isfile(src):
md5sum_src = module.md5(src)
else:
md5sum_src = None
except ValueError:
md5sum_src = None
changed = False
if checksum and checksum_src != checksum:
module.fail_json(
msg='Copied file does not match the expected checksum. Transfer failed.',
checksum=checksum_src,
expected_checksum=checksum
)
# Special handling for recursive copy - create intermediate dirs
if dest.endswith(os.sep):
if _original_basename:
dest = os.path.join(dest, _original_basename)
b_dest = to_bytes(dest, errors='surrogate_or_strict')
dirname = os.path.dirname(dest)
b_dirname = to_bytes(dirname, errors='surrogate_or_strict')
if not os.path.exists(b_dirname):
try:
(pre_existing_dir, new_directory_list) = split_pre_existing_dir(dirname)
except AnsibleModuleError as e:
e.result['msg'] += ' Could not copy to {0}'.format(dest)
module.fail_json(**e.results)
os.makedirs(b_dirname)
directory_args = module.load_file_common_arguments(module.params)
directory_mode = module.params["directory_mode"]
if directory_mode is not None:
directory_args['mode'] = directory_mode
else:
directory_args['mode'] = None
adjust_recursive_directory_permissions(pre_existing_dir, new_directory_list, module, directory_args, changed)
if os.path.isdir(b_dest):
basename = os.path.basename(src)
if _original_basename:
basename = _original_basename
dest = os.path.join(dest, basename)
b_dest = to_bytes(dest, errors='surrogate_or_strict')
if os.path.exists(b_dest):
if os.path.islink(b_dest) and follow:
b_dest = os.path.realpath(b_dest)
dest = to_native(b_dest, errors='surrogate_or_strict')
if not force:
module.exit_json(msg="file already exists", src=src, dest=dest, changed=False)
if os.access(b_dest, os.R_OK) and os.path.isfile(b_dest):
checksum_dest = module.sha1(dest)
else:
if not os.path.exists(os.path.dirname(b_dest)):
try:
# os.path.exists() can return false in some
# circumstances where the directory does not have
# the execute bit for the current user set, in
# which case the stat() call will raise an OSError
os.stat(os.path.dirname(b_dest))
except OSError as e:
if "permission denied" in to_native(e).lower():
module.fail_json(msg="Destination directory %s is not accessible" % (os.path.dirname(dest)))
module.fail_json(msg="Destination directory %s does not exist" % (os.path.dirname(dest)))
if not os.access(os.path.dirname(b_dest), os.W_OK) and not module.params['unsafe_writes']:
module.fail_json(msg="Destination %s not writable" % (os.path.dirname(dest)))
backup_file = None
if checksum_src != checksum_dest or os.path.islink(b_dest):
if not module.check_mode:
try:
if backup:
if os.path.exists(b_dest):
backup_file = module.backup_local(dest)
# allow for conversion from symlink.
if os.path.islink(b_dest):
os.unlink(b_dest)
open(b_dest, 'w').close()
if validate:
# if we have a mode, make sure we set it on the temporary
# file source as some validations may require it
if mode is not None:
module.set_mode_if_different(src, mode, False)
if owner is not None:
module.set_owner_if_different(src, owner, False)
if group is not None:
module.set_group_if_different(src, group, False)
if "%s" not in validate:
module.fail_json(msg="validate must contain %%s: %s" % (validate))
(rc, out, err) = module.run_command(validate % src)
if rc != 0:
module.fail_json(msg="failed to validate", exit_status=rc, stdout=out, stderr=err)
b_mysrc = b_src
if remote_src and os.path.isfile(b_src):
_, b_mysrc = tempfile.mkstemp(dir=os.path.dirname(b_dest))
shutil.copyfile(b_src, b_mysrc)
try:
shutil.copystat(b_src, b_mysrc)
except OSError as err:
if err.errno == errno.ENOSYS and mode == "preserve":
module.warn("Unable to copy stats {0}".format(to_native(b_src)))
else:
raise
# might be needed below
if PY3 and hasattr(os, 'listxattr'):
try:
src_has_acls = 'system.posix_acl_access' in os.listxattr(src)
except Exception as e:
# assume unwanted ACLs by default
src_has_acls = True
module.atomic_move(b_mysrc, dest, unsafe_writes=module.params['unsafe_writes'])
if PY3 and hasattr(os, 'listxattr') and platform.system() == 'Linux' and not remote_src:
# atomic_move used above to copy src into dest might, in some cases,
# use shutil.copy2 which in turn uses shutil.copystat.
# Since Python 3.3, shutil.copystat copies file extended attributes:
# https://docs.python.org/3/library/shutil.html#shutil.copystat
# os.listxattr (along with others) was added to handle the operation.
# This means that on Python 3 we are copying the extended attributes which includes
# the ACLs on some systems - further limited to Linux as the documentation above claims
# that the extended attributes are copied only on Linux. Also, os.listxattr is only
# available on Linux.
# If not remote_src, then the file was copied from the controller. In that
# case, any filesystem ACLs are artifacts of the copy rather than preservation
# of existing attributes. Get rid of them:
if src_has_acls:
# FIXME If dest has any default ACLs, there are not applied to src now because
# they were overridden by copystat. Should/can we do anything about this?
# 'system.posix_acl_default' in os.listxattr(os.path.dirname(b_dest))
try:
clear_facls(dest)
except ValueError as e:
if 'setfacl' in to_native(e):
# No setfacl so we're okay. The controller couldn't have set a facl
# without the setfacl command
pass
else:
raise
except RuntimeError as e:
# setfacl failed.
if 'Operation not supported' in to_native(e):
# The file system does not support ACLs.
pass
else:
raise
except (IOError, OSError):
module.fail_json(msg="failed to copy: %s to %s" % (src, dest), traceback=traceback.format_exc())
changed = True
else:
changed = False
if checksum_src is None and checksum_dest is None:
if remote_src and os.path.isdir(module.params['src']):
b_src = to_bytes(module.params['src'], errors='surrogate_or_strict')
b_dest = to_bytes(module.params['dest'], errors='surrogate_or_strict')
if src.endswith(os.path.sep) and os.path.isdir(module.params['dest']):
diff_files_changed = copy_diff_files(b_src, b_dest, module)
left_only_changed = copy_left_only(b_src, b_dest, module)
common_dirs_changed = copy_common_dirs(b_src, b_dest, module)
owner_group_changed = chown_recursive(b_dest, module)
if diff_files_changed or left_only_changed or common_dirs_changed or owner_group_changed:
changed = True
if src.endswith(os.path.sep) and not os.path.exists(module.params['dest']):
b_basename = to_bytes(os.path.basename(src), errors='surrogate_or_strict')
b_dest = to_bytes(os.path.join(b_dest, b_basename), errors='surrogate_or_strict')
b_src = to_bytes(os.path.join(module.params['src'], ""), errors='surrogate_or_strict')
if not module.check_mode:
shutil.copytree(b_src, b_dest, symlinks=not(local_follow))
chown_recursive(dest, module)
changed = True
if not src.endswith(os.path.sep) and os.path.isdir(module.params['dest']):
b_basename = to_bytes(os.path.basename(src), errors='surrogate_or_strict')
b_dest = to_bytes(os.path.join(b_dest, b_basename), errors='surrogate_or_strict')
b_src = to_bytes(os.path.join(module.params['src'], ""), errors='surrogate_or_strict')
if not module.check_mode and not os.path.exists(b_dest):
shutil.copytree(b_src, b_dest, symlinks=not(local_follow))
changed = True
chown_recursive(dest, module)
if module.check_mode and not os.path.exists(b_dest):
changed = True
if os.path.exists(b_dest):
diff_files_changed = copy_diff_files(b_src, b_dest, module)
left_only_changed = copy_left_only(b_src, b_dest, module)
common_dirs_changed = copy_common_dirs(b_src, b_dest, module)
owner_group_changed = chown_recursive(b_dest, module)
if diff_files_changed or left_only_changed or common_dirs_changed or owner_group_changed:
changed = True
if not src.endswith(os.path.sep) and not os.path.exists(module.params['dest']):
b_basename = to_bytes(os.path.basename(module.params['src']), errors='surrogate_or_strict')
b_dest = to_bytes(os.path.join(b_dest, b_basename), errors='surrogate_or_strict')
if not module.check_mode and not os.path.exists(b_dest):
os.makedirs(b_dest)
b_src = to_bytes(os.path.join(module.params['src'], ""), errors='surrogate_or_strict')
diff_files_changed = copy_diff_files(b_src, b_dest, module)
left_only_changed = copy_left_only(b_src, b_dest, module)
common_dirs_changed = copy_common_dirs(b_src, b_dest, module)
owner_group_changed = chown_recursive(b_dest, module)
if diff_files_changed or left_only_changed or common_dirs_changed or owner_group_changed:
changed = True
if module.check_mode and not os.path.exists(b_dest):
changed = True
res_args = dict(
dest=dest, src=src, md5sum=md5sum_src, checksum=checksum_src, changed=changed
)
if backup_file:
res_args['backup_file'] = backup_file
module.params['dest'] = dest
if not module.check_mode:
file_args = module.load_file_common_arguments(module.params)
res_args['changed'] = module.set_fs_attributes_if_different(file_args, res_args['changed'])
module.exit_json(**res_args)
if __name__ == '__main__':
main()
roles/docker-htcondor/tasks/main.yml
-142
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@@ -1,142 +0,0 @@
- name: "htcondor docker image"
file:
path: "/container/docker-images/htcondor"
state: directory
owner: "{{unpriv_user}}"
group: docker
mode: "u=rwx,g=rwx,o=rx"
- copy:
dest: "/container/docker-images/htcondor/Dockerfile"
src: "htcondor.Dockerfile"
owner: "{{unpriv_user}}"
group: docker
register: cp_dockerfile
- docker_image:
name: "htcondor"
# pull: False
build:
pull: False
path: "/container/docker-images/htcondor"
source: build
force_source: "{{cp_dockerfile.changed}}"
- name: "copy htcondor container configuration"
copy:
src: "conf/{{item}}/"
dest: "/container/volumes/{{item}}/"
owner: "{{unpriv_user}}"
group: docker
mode: "u=rwx,g=rwx"
with_items: [ "cm", "exec", "sub", "common"]
- name: "check if pool shared secret exists"
stat:
path: "/container/volumes/common/passwords.d/POOL"
register: pool_pw
- block:
- name: "create temporary password store"
tempfile:
state: directory
register: pool_pw_tmp
- name: "generate pool password"
copy:
dest: "{{pool_pw_tmp.path}}/poolpw"
content: "{{lookup('password','/dev/null')}}"
no_log: True
- name: "install pool password"
docker_container:
name: "condor-common"
image: htcondor
state: started
volumes:
- "/container/volumes/common/:/etc/condor/:rw"
- "{{pool_pw_tmp.path}}:/tmp/poolpw:ro"
detach: False
cleanup: True
command: "condor_store_cred add -c -i /tmp/poolpw/poolpw"
- name: "remove tokens since pool password (cert) changed"
file:
path: "/container/volumes/{{item}}/tokens.d/condor@htc.local"
state: absent
with_items: [ "cm", "exec", "sub" ]
always:
- name: "remove temporary password store"
file:
path: "{{pool_pw_tmp.path}}"
state: absent
when: pool_pw_tmp is defined and pool_pw_tmp.path
when: not pool_pw.stat.exists
- name: "sync common files to individual containers"
copy_2:
remote_src: True
force: True
directory_mode: preserve
mode: preserve
src: "/container/volumes/common/"
dest: "/container/volumes/{{item}}/"
with_items: [ "cm", "exec", "sub"]
- name: "collect tokens to generate"
stat:
path: "/container/volumes/{{item}}/tokens.d/condor@htc.local"
with_items: [ "cm", "exec", "sub" ]
register: tokens_state
- name: "generate tokens"
docker_container:
name: "condor-common"
image: htcondor
state: started
volumes:
- "/container/volumes/{{item}}/:/etc/condor/:rw"
detach: False
cleanup: True
command: "condor_token_create -identity condor@$(domainname) -token /etc/condor/tokens.d/condor@htc.local"
with_items: "{{tokens_state.results | rejectattr('stat.exists') | map(attribute='item') | list }}"
- name: "create docker network to make service discovery work"
docker_network:
name: condor
state: present
# TODO: reserve some address using docker_network_info and assign as aux
# address to enable cm to get a static address in order to be reachable from
# htcondor running on docker host to enable submitting jobs.
- name: "run htcondor containers"
docker_container:
name: "condor-{{item}}"
hostname: "condor-{{item}}"
domainname: "htc.local"
image: htcondor
state: started
detach: True
cleanup: True
networks_cli_compatible: True
networks:
- name: "condor"
aliases: [ "condor-{{item}}.htc.local" ]
volumes:
- "/container/volumes/{{item}}/:/etc/condor/:rw"
with_items: [ "cm", "exec", "sub"]
# auto_remove: True
# mounts:
# src: /container/volumes/cm/
# dest: /etc/condor/
#- add_host:
# hostname: foo
# ansible_connection: docker_api
# docker_host: ssh://ed-c7-1.virt.magni.thoto.net
roles/docker/tasks/main.yml
-56
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@@ -1,56 +0,0 @@
- name: "install docker yum repository"
get_url:
url: "https://download.docker.com/linux/centos/docker-ce.repo"
dest: "/etc/yum.repos.d/docker-ce.repo"
checksum: sha256:8ab5599eef0afcac10cbd3e8670873efee20fcceb5fb3526a62edeade603cec7
- yum:
name: [ "docker-ce", "python-docker-py" ] # latter for ansible modules
state: present
- name: "partition container image disk"
parted:
device: /dev/vdb
number: 1
state: present
# fs_type: xfs
- filesystem:
dev: /dev/vdb1
fstype: xfs
opts: "-L image-store"
- mount:
path: "/container"
src: "/dev/vdb1"
fstype: xfs
opts: "noatime"
state: mounted
- file:
path: "/container/docker"
state: directory
owner: root
group: root
mode: "u=rwx,g=x,o=x"
- name: "link docker configuration to new container partition"
file:
path: "/var/lib/docker"
src: "/container/docker"
state: link
owner: root
group: root
mode: "u=rwx,g=x,o=x"
- name: "enable docker service in systemd"
service:
name: docker
enabled: True
state: started
- name: "fix user privileges to run docker"
user:
name: "{{unpriv_user}}"
groups: docker
append: True
roles/singularity/tasks/main.yml
-18
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@@ -1,18 +0,0 @@
- yum:
name: singularity
state: present
- name: "enable user namespaces for singularity fakeroot function"
sysctl:
name: user.max_user_namespaces
value: "15000"
sysctl_file: /etc/sysctl.d/90-max_net_namespaces.conf
- name: "enable user {{unpriv_user}} for fakeroot access"
lineinfile:
line: "{{unpriv_user}}:4294836224:65536"
dest: "{{item}}"
with_items: ["/etc/subuid", "/etc/subgid"]
# the task above idempotentially does the same as:
#- shell:
# command: singularity config fakeroot --add thoto
roles/slurm/defaults/main.yml
-9
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@@ -1,9 +0,0 @@
slurm_user: slurm
slurm_log_path_ctld: /var/log/slurm/slurmctld.log
slurm_log_path_d: /var/log/slurm/slurmd.log
slurm_log_path_sched: /var/log/slurm/slurmsched.log
slurm_prefix: slurm
slurm_domain: slurm.local
container_privileged: False
docker_network: slurm
slurm_image_prefix: slurm
roles/slurm/files/docker-init
-18
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@@ -1,18 +0,0 @@
#!/bin/bash
function trp_term(){
echo pkill -P $pids
for j in $pids ; do
pkill -P $j
kill -SIGTERM $j
done
}
trap trp_term SIGINT SIGTERM
pids=""
for i in /etc/docker-init.d/* ; do
[ ! -f $i ] && break
$i &
pids="$pids $!"
done
wait $pids
# TODO: call start scripts like "foo.sh start" and "foo.sh stop" to avoid pkill
roles/slurm/files/entry-munge.sh
-7
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@@ -1,7 +0,0 @@
#!/usr/bin/env bash
set -e
if [ -f "/etc/munge/munge.key" ] ; then
chown munge:munge /etc/munge/munge.key
chmod 600 /etc/munge/munge.key
fi
roles/slurm/files/entrypoint.sh
-8
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@@ -1,8 +0,0 @@
#!/usr/bin/env bash
set -e
for i in /usr/local/lib/entrypoints.d/* ; do
[ -f $i ] && /bin/sh $i || break
done
exec "${@:-/bin/bash}"
roles/slurm/files/slurm-base.Dockerfile
-35
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@@ -1,35 +0,0 @@
FROM docker.io/library/centos:7
RUN yum install -y epel-release && \
yum install -y slurm && \
yum clean all && rm -rf /var/cache/yum
RUN yum install -y less iproute bind-utils nmap-ncat net-tools && \
yum clean all && rm -rf /var/cache/yum
RUN mkdir -p /usr/local/lib/entrypoints.d/
COPY --chown=root:root entry-munge.sh /usr/local/lib/entrypoints.d/10-munge.sh
COPY --chown=root:root entrypoint.sh /usr/local/sbin/entrypoint.sh
RUN chmod 755 /usr/local/lib/entrypoints.d/10-munge.sh && \
chmod 755 /usr/local/sbin/entrypoint.sh
ENTRYPOINT [ "/usr/local/sbin/entrypoint.sh" ]
ARG slurmuser=slurm
ENV slurmuser=${slurmuser}
RUN useradd -d /var/lib/slurm -m --no-log-init --system $slurmuser &&\
slurm-setuser -u $slurmuser -g $slurmuser -y
COPY docker-init /usr/local/sbin/docker-init
RUN mkdir /etc/docker-init.d && chmod 755 /usr/local/sbin/docker-init
COPY start-scripts/10-munge /etc/docker-init.d/10-munge
RUN chmod 755 /etc/docker-init.d/10-munge
ARG moreusers
RUN function mu { [ -z "$1" ] || useradd -d $2 -m --no-log-init --system $1 ;};\
echo "${moreusers}" | tr ',' '\n' | while read i ; do mu $i ; done
CMD /usr/local/sbin/docker-init
roles/slurm/files/slurmctld.Dockerfile
-11
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@@ -1,11 +0,0 @@
FROM slurm:base
RUN yum install -y slurm-slurmctld && \
yum clean all && rm -rf /var/cache/yum
COPY start-scripts/20-slurmctld /etc/docker-init.d/20-slurmctld
RUN chmod 755 /etc/docker-init.d/20-slurmctld
ENV SLURMCTLD_LOG_PATH="/var/log/slurm/slurmctld.log"
ENV SLURMD_LOG_PATH="/var/log/slurm/slurmd.log"
ENV SLURM_SCHED_LOG_PATH="/var/log/slurm/slurmsched.log"
roles/slurm/files/slurmd.Dockerfile
-14
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@@ -1,14 +0,0 @@
FROM slurm:base
RUN yum install -y slurm-slurmd && \
yum clean all && rm -rf /var/cache/yum
COPY start-scripts/30-slurmd /etc/docker-init.d/30-slurmd
RUN chmod 755 /etc/docker-init.d/30-slurmd
ENV SLURMCTLD_LOG_PATH="/var/log/slurm/slurmctld.log"
ENV SLURMD_LOG_PATH="/var/log/slurm/slurmd.log"
ENV SLURM_SCHED_LOG_PATH="/var/log/slurm/slurmsched.log"
RUN yum install -y singularity && \
yum clean all && rm -rf /var/cache/yum
roles/slurm/files/start-scripts/10-munge
-2
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@@ -1,2 +0,0 @@
#!/bin/sh
exec su -s /bin/sh -c "munged -F" munge
roles/slurm/files/start-scripts/20-slurmctld
-4
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@@ -1,4 +0,0 @@
#!/bin/sh
su -s /bin/sh -c "slurmctld -D" ${slurmuser} 2>/dev/null 1>/dev/null &
tail --retry --pid $! -f ${SLURMCTLD_LOG_PATH} ${SLURM_SCHED_LOG_PATH}
roles/slurm/files/start-scripts/30-slurmd
-4
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@@ -1,4 +0,0 @@
#!/bin/sh
slurmd -D 2>/dev/null 1>/dev/null &
tail --retry --pid $! -f ${SLURMD_LOG_PATH} ${SLURM_SCHED_LOG_PATH}
roles/slurm/handlers/main.yml
-3
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@@ -1,3 +0,0 @@
- name: reconfigure slurm
shell:
cmd: "docker container exec -it {{slurm_prefix}}-ctl scontrol reconfigure || docker container restart {{slurm_prefix}}-ctl && docker container exec -it {{slurm_prefix}}-ctl scontrol reconfigure"
roles/slurm/tasks/dockerimage.yml
-29
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@@ -1,29 +0,0 @@
- name: build slurm base docker image
include_tasks: dockerimage_build.yml
vars:
slurm_image_prefix: "{{slurm_base_image_prefix | default('slurm') }}"
image_name: base
dockerfile: "{{lookup('file', 'slurm-base.Dockerfile')}}"
files:
- dest: entrypoint.sh
content: "{{ lookup('file', 'entrypoint.sh') }}"
- dest: entry-munge.sh
content: "{{ lookup('file', 'entry-munge.sh') }}"
- dest: docker-init
content: "{{ lookup('file', 'docker-init') }}"
- dest: start-scripts/10-munge
content: "{{ lookup('file', 'start-scripts/10-munge') }}"
image_args:
moreusers: >-
{% for a in slurm_user_accounts | default([]) -%}
{{a['name']}} {{a['dir']}}{{loop.last | ternary('',',')}}
{%- endfor %}
when: not slurm_baseimg_build_chg | default(False)
- set_fact:
slurm_baseimg_build_chg:
"{{(slurm_baseimg_build_chg | default(False)) or
slurm_img_build.changed}}"
- name: "build slurm base docker image {{image_name}}"
include_tasks: dockerimage_build.yml
roles/slurm/tasks/dockerimage_build.yml
-43
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@@ -1,43 +0,0 @@
- name: create directories for docker image build
file:
path: "/container/docker-images/{{slurm_image_prefix}}-{{image_name}}/{{item}}"
state: directory
owner: "{{unpriv_user}}"
group: docker
loop: "{{ [''] + (files | map(attribute='dest') | map('dirname') |
unique | select | list) }}"
- name: "copy Dockerfile {{slurm_image_prefix}}:{{image_name}}"
copy:
content: "{{dockerfile}}"
dest: "/container/docker-images/{{slurm_image_prefix}}-{{image_name}}/Dockerfile"
owner: "{{unpriv_user}}"
group: docker
register: slurm_cp_dockerfile
- name: copy requisite files
copy:
content: "{{ item.content }}"
dest: "/container/docker-images/{{slurm_image_prefix}}-{{image_name}}/{{item.dest}}"
owner: root
group: root
mode: u=rwx,g=rx,o=rx
loop: "{{ files | default([]) }}"
loop_control:
label: "{{ item.dest }}"
register: slurm_cp_files
- name: "build docker image {{slurm_image_prefix}}:{{image_name}}"
docker_image:
name: "{{slurm_image_prefix}}"
tag: "{{image_name}}"
# pull: False
build:
args: "{{image_args | default(omit)}}"
pull: False
path: "/container/docker-images/{{slurm_image_prefix}}-{{image_name}}/"
source: build
force_source: "{{slurm_cp_dockerfile.changed or
slurm_cp_files.changed or
slurm_baseimg_build_chg | default(False) }}"
register: slurm_img_build
roles/slurm/tasks/host-config.yml
-35
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@@ -1,35 +0,0 @@
# TODO: this does not work quite right since slurm-ctl does not reach the host
# system. sinfo, scontrol etc. work but srun does not!
- name: "get addresses from docker network"
docker_network_info:
name: "{{ docker_network }}"
register: slurm_network_data
- name: link host slurm config
file:
path: "/etc/slurm/slurm.conf"
src: "/container/volumes/slurm/slurm.conf"
force: True
state: link
backup: True
- name: create slurm user
user:
name: slurm
system: True
- name: place entry of slurm-ctl in host /etc/hosts
lineinfile:
line: "{{slurm_network_data.network.Containers | dict2items
| json_query('[?value.Name==`slurm-ctl`].value.IPv4Address') | first
| ipaddr('address') }}\tslurm-ctl"
regexp: "^(\\S*)(\\s*)slurm-ctl$"
path: /etc/hosts
backup: True
- name: start munge locally
service:
name: munge
enabled: True
state: started
roles/slurm/tasks/main.yml
-138
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@@ -1,138 +0,0 @@
- name: 'install slurm tools on host'
yum:
name: [ slurm, slurm-doc ]
state: present
- name: build docker images for slurm
include_tasks:
file: dockerimage.yml
loop:
- name: slurmctld
dockerfile: "{{ lookup('file', 'slurmctld.Dockerfile') }}"
files:
- dest: start-scripts/20-slurmctld
content: "{{ lookup('file', 'start-scripts/20-slurmctld') }}"
- name: slurmd
dockerfile: "{{ lookup('file', 'slurmd.Dockerfile') }}"
files:
- dest: start-scripts/30-slurmd
content: "{{ lookup('file', 'start-scripts/30-slurmd') }}"
vars:
image_name: "{{image.name | default(omit) }}"
dockerfile: "{{image.dockerfile | default(omit) }}"
files: "{{image.files | default(omit) }}"
loop_control:
loop_var: image
label: "{{ image.name }}"
- name: generate munge key
shell:
cmd: dd if=/dev/urandom bs=1 count=1024 >/etc/munge/munge.key
creates: /etc/munge/munge.key
- name: set permissions on munge key
file:
path: /etc/munge/munge.key
owner: munge
group: munge
mode: u=rw,g=,o=
- name: create munge key directory for containers
file:
path: /container/volumes/munge
state: directory
owner: munge
group: munge
mode: u=rwx,g=,o=
- name: copy munge key to docker containers
copy:
remote_src: True
force: true
mode: preserve
src: /etc/munge/munge.key
dest: /container/volumes/munge/munge.key
- name: make slurm directory
file:
path: /container/volumes/slurm/
state: directory
- name: "create docker network to make service discovery work"
docker_network:
name: "{{ docker_network }}"
state: present
register: slurm_network_data
tags: slurm-config
- name: upload slurm config
template:
force: true
src: "{{item}}.j2"
dest: "/container/volumes/slurm/{{item}}"
loop:
- slurm.conf
- cgroup.conf
vars:
slurm_exec_node_cores: 3
slurm_exec_node_mem: 5000 # RealMemory=5964
slurm_alloc_nodes_default:
- name: "{{slurm_prefix+'-submit1'}}"
- name: "{{ inventory_hostname }}"
addr: "{{ slurm_network_data.network.IPAM.Config[0].Gateway }}"
alloc_nodes: "{{ slurm_alloc_nodes_default + extra_nodes | default([])}}"
partitions:
- name: cobald
nodeprefix: drone
num_nodes: 10
node_cores: 3
node_mem: 4900
port: 16818
initstate: FUTURE
notify: reconfigure slurm
tags: slurm-config
- name: "create docker volume for shared access between nodes"
docker_volume:
name: slurm-shared
state: present
- name: run slurm docker containers
docker_container:
name: "{{ slurm_prefix }}-{{ item.machine }}"
hostname: "{{ slurm_prefix }}-{{ item.machine }}"
domainname: "{{ slurm_domain }}"
volumes: "{{ slurm_default_mounts + ( item.extra_mounts | default([]) ) }}"
ports: "{{ item.exposed_ports | default([]) }}"
networks:
- name: "{{ docker_network }}"
aliases: "{{ item.aliases | default(omit) }}"
env:
slurmuser: "{{ slurm_user }}"
image: "{{ item.image }}"
state: started
detach: True
cleanup: True
privileged: "{{ container_privileged | bool }}"
networks_cli_compatible: True
interactive: True
vars: # see vars/main.yml
slurm_nodes_all: "{{ slurm_nodes_exec + slurm_nodes_std }}"
loop: "{{ slurm_nodes_all }}"
loop_control:
label: "{{slurm_prefix}}-{{ item.machine }}"
tags: slurm-config
- name: configure host system to integrate into slurm cluster
import_tasks: host-config.yml
when: slurm_hostsystem_cluster_access | default(False)
- name: export facts about slurm cluster to be used by other modules
set_fact:
slurm:
user: "{{slurm_user}}"
domain: "{{slurm_domain}}"
base_image: "slurm:base"
mounts: "{{slurm_default_mounts}}"
network: "{{docker_network}}"
tags: always
roles/slurm/templates/cgroup.conf.j2
-11
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@@ -1,11 +0,0 @@
###
#
# Slurm cgroup support configuration file
#
# See man slurm.conf and man cgroup.conf for further
# information on cgroup configuration parameters
#--
CgroupAutomount=yes
ConstrainCores=no
ConstrainRAMSpace=no
roles/slurm/templates/slurm.conf.j2
-193
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@@ -1,193 +0,0 @@
#
# See the slurm.conf man page for more information.
#
ControlMachine=slurm-ctl
# ControlAddr=127.0.0.1
#BackupController=
#BackupAddr=
#
AuthType=auth/munge
#CheckpointType=checkpoint/none
CryptoType=crypto/munge
CommunicationParameters=NoAddrCache
SlurmctldParameters=enable_configless
#DisableRootJobs=NO
#EnforcePartLimits=NO
#Epilog=
#EpilogSlurmctld=
#FirstJobId=1
#MaxJobId=999999
#GresTypes=
#GroupUpdateForce=0
#GroupUpdateTime=600
#JobCheckpointDir=/var/slurm/checkpoint
#JobCredentialPrivateKey=
#JobCredentialPublicCertificate=
#JobFileAppend=0
#JobRequeue=1
#JobSubmitPlugins=
#KillOnBadExit=0
#LaunchType=launch/slurm
#Licenses=foo*4,bar
#MailProg=/bin/true
#MaxJobCount=5000
#MaxStepCount=40000
#MaxTasksPerNode=128
MpiDefault=pmix
# when running slurmd as user change to: MpiDefault=none
#MpiParams=ports=#-#
#PluginDir=
#PlugStackConfig=
#PrivateData=jobs
{% if container_privileged -%}
ProctrackType=proctrack/cgroup
{% else -%}
{# when not running privileged docker container, cgroups cannot be used and
jobs fail without comment in any log #}
ProctrackType=proctrack/linuxproc
{% endif %}
#Prolog=
#PrologFlags=
#PrologSlurmctld=
#PropagatePrioProcess=0
#PropagateResourceLimits=
#PropagateResourceLimitsExcept=
#RebootProgram=
ReturnToService=1
#SallocDefaultCommand=
SlurmctldPidFile=/var/run/slurm/slurmctld.pid
SlurmctldPort=6817
SlurmdPidFile=/var/run/slurm/slurmd.pid
SlurmdPort=6818
SlurmdSpoolDir=/var/spool/slurm/d
SlurmUser={{slurm_user}}
SlurmdUser=root
# SlurmdUser=slurm -> sbatch does not work
#SrunEpilog=
#SrunProlog=
StateSaveLocation=/var/spool/slurm/ctld
SwitchType=switch/none
#TaskEpilog=
TaskPlugin=task/none
#TaskPluginParam=
#TaskProlog=
#TopologyPlugin=topology/tree
#TmpFS=/tmp
#TrackWCKey=no
#TreeWidth=
#UnkillableStepProgram=
#UsePAM=0
#
#
# TIMERS
#BatchStartTimeout=10
#CompleteWait=0
#EpilogMsgTime=2000
#GetEnvTimeout=2
#HealthCheckInterval=0
#HealthCheckProgram=
InactiveLimit=0
KillWait=30
#MessageTimeout=10
#ResvOverRun=0
MinJobAge=300
#OverTimeLimit=0
SlurmctldTimeout=120
SlurmdTimeout=300
#UnkillableStepTimeout=60
#VSizeFactor=0
Waittime=0
#
#
# SCHEDULING
#DefMemPerCPU=0
#FastSchedule=1
#MaxMemPerCPU=0
#SchedulerTimeSlice=30
SchedulerType=sched/backfill
# SelectType=select/linear
SelectType=select/cons_res
#SelectTypeParameters=
SelectTypeParameters=CR_CORE
#
#
# JOB PRIORITY
#PriorityFlags=
#PriorityType=priority/basic
#PriorityDecayHalfLife=
#PriorityCalcPeriod=
#PriorityFavorSmall=
#PriorityMaxAge=
#PriorityUsageResetPeriod=
#PriorityWeightAge=
#PriorityWeightFairshare=
#PriorityWeightJobSize=
#PriorityWeightPartition=
#PriorityWeightQOS=
#
#
# LOGGING AND ACCOUNTING
#AccountingStorageEnforce=0
#AccountingStorageHost=
#AccountingStorageLoc=
#AccountingStoragePass=
#AccountingStoragePort=
AccountingStorageType=accounting_storage/none
#AccountingStorageUser=
AccountingStoreJobComment=YES
ClusterName=cluster
#DebugFlags=Steps,TraceJobs
#JobCompHost=
JobCompLoc=/tmp/jobcomp
#JobCompPass=
#JobCompPort=
JobCompType=jobcomp/filetxt
#JobCompUser=
#JobContainerType=job_container/none
JobAcctGatherFrequency=30
JobAcctGatherType=jobacct_gather/none
SlurmctldDebug=verbose
SlurmctldLogFile={{slurm_log_path_ctld}}
SlurmdDebug=verbose
SlurmdLogFile={{slurm_log_path_d}}
SlurmSchedLogFile={{slurm_log_path_sched}}
#SlurmSchedLogLevel=
#
#
# POWER SAVE SUPPORT FOR IDLE NODES (optional)
#SuspendProgram=
#ResumeProgram=
#SuspendTimeout=
#ResumeTimeout=
#ResumeRate=
#SuspendExcNodes=
#SuspendExcParts=
#SuspendRate=
#SuspendTime=
#
#
# COMPUTE NODES
NodeName=slurm-exec[1-{{ num_nodes }}] CPUs={{ slurm_exec_node_cores }} {{''
}} RealMemory={{ slurm_exec_node_mem }} {{''
}} CoresPerSocket={{ slurm_exec_node_cores }} State=UNKNOWN
{% for p in partitions | default([]) %}
NodeName={{ p.nodeprefix }}[1-{{ p.num_nodes }}] CPUs={{ p.node_cores }} {{''
}} RealMemory={{ p.node_mem }} {{''
}} CoresPerSocket={{ p.node_cores }} {{''
}} {%- if p.port is defined %} Port={{ p.port}} {% endif %}{{''
}} State={{ p.initstate | default('UNKNOWN') }}
{% endfor %}
{% for i in alloc_nodes -%}
NodeName={{i.name}}
{%- if i.hostname is defined %} NodeHostname={{i.hostname}} {% endif %}
{%- if i.addr is defined %} NodeAddr={{i.addr}} {% endif %}
State=UNKNOWN
{% endfor %}
PartitionName=container Nodes=slurm-exec[1-{{num_nodes}}] {{ ''
}} AllocNodes={{alloc_nodes |map(attribute='name') | join(',')}} {{ ''
}} Default=YES MaxTime=INFINITE State=UP
{% for p in partitions | default([]) %}
PartitionName={{ p.name }} Nodes={{ p.nodeprefix }}[1-{{ p.num_nodes }}] {{ ''
}} AllocNodes={{alloc_nodes |map(attribute='name') | join(',')}} {{ ''
}} MaxTime=INFINITE State=UP
{% endfor %}
roles/slurm/vars/main.yml
-21
View File
@@ -1,21 +0,0 @@
slurm_nodes_std: # default nodes: controller and submit machine
- machine: ctl
image: slurm:slurmctld
exposed_ports: [ "6817:6817/tcp" ]
- machine: submit1
image: slurm:slurmd
extra_mounts:
- "/home/{{unpriv_user}}/job3/:/mnt/:rw"
slurm_nodes_exec: | # extend range to execute nodes list
{% set slurm_nodes_exec = [] %}
{% for i in range(1, num_nodes+1) -%}
{% set _ = slurm_nodes_exec.extend([
{'machine':'exec%s'|format(i), 'image': 'slurm:slurmd',
'aliases':['drone%s'|format(i)]}]) -%}
{%- endfor %}
{{ slurm_nodes_exec }}
slurm_default_mounts:
- /container/volumes/slurm/:/etc/slurm/:rw
- /container/volumes/munge/munge.key:/etc/munge/munge.key:rw
- slurm-shared:/shared/:rw